View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7868_low_1 (Length: 646)

Name: NF7868_low_1
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7868_low_1
NF7868_low_1
[»] chr7 (14 HSPs)
chr7 (162-329)||(37405439-37405606)
chr7 (174-329)||(34844126-34844283)
chr7 (186-288)||(21631243-21631345)
chr7 (178-270)||(21633196-21633288)
chr7 (170-288)||(29597970-29598088)
chr7 (170-261)||(21632958-21633049)
chr7 (170-277)||(21630993-21631104)
chr7 (186-289)||(3233015-3233118)
chr7 (282-329)||(4895659-4895706)
chr7 (282-329)||(28124697-28124744)
chr7 (282-329)||(28126524-28126571)
chr7 (163-261)||(9878120-9878218)
chr7 (282-327)||(44963240-44963285)
chr7 (282-329)||(20046605-20046653)
[»] chr1 (9 HSPs)
chr1 (162-329)||(3284577-3284744)
chr1 (163-329)||(3282876-3283042)
chr1 (163-329)||(9312104-9312270)
chr1 (163-327)||(9310489-9310653)
chr1 (163-323)||(902157-902317)
chr1 (162-244)||(33072899-33072981)
chr1 (282-329)||(17449386-17449433)
chr1 (282-329)||(16808688-16808735)
chr1 (163-251)||(5924777-5924865)
[»] chr6 (14 HSPs)
chr6 (163-329)||(15868467-15868633)
chr6 (163-329)||(15866655-15866821)
chr6 (1-162)||(30394155-30394317)
chr6 (163-329)||(33866174-33866340)
chr6 (163-329)||(33869321-33869487)
chr6 (163-289)||(24544733-24544859)
chr6 (171-329)||(14618998-14619155)
chr6 (171-329)||(14611158-14611315)
chr6 (170-265)||(32080076-32080169)
chr6 (282-329)||(1088762-1088809)
chr6 (282-329)||(19645409-19645456)
chr6 (282-329)||(5376952-5377000)
chr6 (282-329)||(5378807-5378855)
chr6 (163-215)||(30488623-30488675)
[»] scaffold0251 (1 HSPs)
scaffold0251 (174-329)||(6301-6456)
[»] chr5 (4 HSPs)
chr5 (164-329)||(39787050-39787215)
chr5 (170-261)||(21637131-21637222)
chr5 (174-251)||(20012925-20013002)
chr5 (227-289)||(33689981-33690043)
[»] chr4 (15 HSPs)
chr4 (163-288)||(5653163-5653288)
chr4 (171-329)||(23985849-23986006)
chr4 (163-320)||(51295246-51295404)
chr4 (186-329)||(3529163-3529303)
chr4 (167-306)||(18395638-18395776)
chr4 (175-265)||(24807562-24807652)
chr4 (174-251)||(52545105-52545182)
chr4 (165-261)||(42665075-42665171)
chr4 (282-329)||(7040436-7040483)
chr4 (282-329)||(23564784-23564831)
chr4 (282-329)||(23566458-23566505)
chr4 (282-329)||(52520676-52520723)
chr4 (282-329)||(54296503-54296550)
chr4 (163-261)||(18393689-18393787)
chr4 (282-329)||(18656183-18656230)
[»] chr2 (3 HSPs)
chr2 (170-288)||(20957729-20957847)
chr2 (228-288)||(20957557-20957617)
chr2 (282-329)||(29758195-29758242)
[»] scaffold0057 (1 HSPs)
scaffold0057 (163-329)||(58861-59025)
[»] chr8 (11 HSPs)
chr8 (163-251)||(19473683-19473771)
chr8 (163-251)||(19544608-19544696)
chr8 (163-251)||(19588000-19588088)
chr8 (162-245)||(14939672-14939755)
chr8 (174-251)||(31032006-31032083)
chr8 (282-329)||(30224305-30224352)
chr8 (282-329)||(6428815-6428862)
chr8 (282-329)||(25249081-25249128)
chr8 (282-329)||(3375532-3375579)
chr8 (282-329)||(5567501-5567548)
chr8 (163-251)||(950082-950170)
[»] scaffold0060 (1 HSPs)
scaffold0060 (176-288)||(8961-9073)
[»] chr3 (5 HSPs)
chr3 (282-329)||(6789695-6789742)
chr3 (163-261)||(9032695-9032793)
chr3 (282-329)||(1140076-1140123)
chr3 (282-329)||(17402891-17402939)
chr3 (186-251)||(25836524-25836589)
[»] scaffold0160 (1 HSPs)
scaffold0160 (168-237)||(28524-28593)
[»] scaffold0079 (1 HSPs)
scaffold0079 (163-215)||(15746-15798)
[»] scaffold0006 (1 HSPs)
scaffold0006 (174-215)||(39332-39373)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 162 - 329
Target Start/End: Original strand, 37405439 - 37405606
Alignment:
Q  162 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37405439 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatag 37405538  T
Q  262 gagagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37405539 gagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 37405606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 34844283 - 34844126
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaactt 273  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||     
T  34844283 aaggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatagtagagtaaacta 34844184  T
Q  274 gatttaacaaaagat--agtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    ||||| | |||||||  | ||||   |||||  ||||||||||||||||||| |||||    
T  34844183 gatttgataaaagatggattgaaatgatacatgagtgttcctatatatagagtttagt 34844126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 21631243 - 21631345
Alignment:
Q  186 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 285  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| | ||||    
T  21631243 ggataaagatcatattgatcagctagaaagagagcataggtgtattaatgtgggagatacccatagtgactcatagtagagtaaactagatttgataaaa 21631342  T
Q  286 gat 288  Q
    |||    
T  21631343 gat 21631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 21633196 - 21633288
Alignment:
Q  178 aatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 270  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  21633196 aatcccagggataaagatcatagtgatcagctagaaagagagcatagatgtattcatgtgggagatactcatagtgacccatagtagagtaaa 21633288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 29597970 - 29598088
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaa 269  Q
    ||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||| | |    
T  29597970 aatcatggaatcccagggataaaggtcatagtgatcagcaagaaagagagcataagagtattcatgtgggagatacccatagagactcatagtagaatga 29598069  T
Q  270 acttgatttaacaaaagat 288  Q
    ||| ||||| | |||||||    
T  29598070 actagatttgataaaagat 29598088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 21632958 - 21633049
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    ||||| ||||||||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  21632958 aatcatggaatcccatggataaagatcacagtgatcagctgaaaagagagcataggtgtattcatgtgggagatacacatagtgactcatag 21633049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 21630993 - 21631104
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatc----agctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 265  Q
    ||||| ||||||| | ||||||||||||||||||||    |||||||||||||||||| || |||| ||||||||||||| ||||||||||||||| |||    
T  21630993 aatcatggaatcctagggataaagatcatagtgatcgatcagctagaaagagagcataggtctattaatgtgggagatacacatagtgactcatagtaga 21631092  T
Q  266 gtaaacttgatt 277  Q
    ||||||| ||||    
T  21631093 gtaaactagatt 21631104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 3233118 - 3233015
Alignment:
Q  186 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 285  Q
    |||||||| ||| |||||||||| |||||||||||||| | |||||||||||||||||| |||||  || | |||| ||| | |||| ||||||| ||||    
T  3233118 ggataaaggtcacagtgatcagcaagaaagagagcataagagtattcatgtgggagatatccatacagatttatagtagaatgaactagatttaataaaa 3233019  T
Q  286 gata 289  Q
    ||||    
T  3233018 gata 3233015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 4895706 - 4895659
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  4895706 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 4895659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 28124697 - 28124744
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 28124744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 28126524 - 28126571
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 28126571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 9878120 - 9878218
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    |||||| ||| | |||||| ||||||||||  | |||||||  ||| ||||||||||||||   |||||||||||||||||| | |||| |||||||||    
T  9878120 tgttagaaattatggaatctcaaggataaatgttatagtgaatagcaagaaagagagcataatagtattcatgtgggagatatctatagagactcatag 9878218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 44963285 - 44963240
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagatta 327  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||    
T  44963285 aaaagatgatgaatgagtacaatagtgttcctatatatagagatta 44963240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 20046605 - 20046653
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 329  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  20046605 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 20046653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 162 - 329
Target Start/End: Complemental strand, 3284744 - 3284577
Alignment:
Q  162 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3284744 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatag 3284645  T
Q  262 gagagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3284644 gagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 3284577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 3283042 - 3282876
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  3283042 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcatgtgggagatacccatagtgacttatagg 3282943  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3282942 agagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 3282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 9312270 - 9312104
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  9312270 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatactcatagtgactcatggg 9312171  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9312170 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagt 9312104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 163 - 327
Target Start/End: Complemental strand, 9310653 - 9310489
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310653 tgttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 9310554  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagatta 327  Q
    |||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  9310553 agagtaaattagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagatatta 9310489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 902317 - 902157
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  902317 tgttagtaatcaagaaattccaaggataaagatcataatgatcagttagaaagagagcataggtgtattcatgtgggagatacccatagtgactcatagg 902218  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagag 323  Q
    |||||||||| |||||||||||||||| ||||   |||||  |||||||||||||| ||||    
T  902217 agagtaaactagatttaacaaaagataatgaaatgatacatgagtgttcctatatagagag 902157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 33072981 - 33072899
Alignment:
Q  162 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagata 244  Q
    |||||||| |||| |||||| || |||||||| ||||| |||||||| ||||||||| |||| | ||||||||||||||||||    
T  33072981 ctgttagtcatcatggaatctcagggataaaggtcataatgatcagcaagaaagagatcataagagtattcatgtgggagata 33072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 17449433 - 17449386
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  17449433 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 17449386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 16808688 - 16808735
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||||||    
T  16808688 aaaagatgatgaatgagtacaatagtgttcatatatatagagattagt 16808735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 5924777 - 5924865
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    ||||| |||||| | ||||| | ||||||||||||||||||||||  | ||||  |||||| | |||||||| | |||||||| |||||    
T  5924777 tgttactaatcatgaaatccgatggataaagatcatagtgatcagtaaaaaagcaagcataagagtattcatataggagatactcatag 5924865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 15868633 - 15868467
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868633 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 15868534  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  15868533 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagt 15868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 15866821 - 15866655
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15866821 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 15866722  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  15866721 agagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctaaatatagagattagt 15866655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 30394155 - 30394317
Alignment:
Q  1 tcggaagaaagagatgaattgt-gagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaataaaaaatgttatata 99  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394155 tcggaagaaagagatggattgttgagtggaatgaacatgcaagcaacatcaatatcttagagaacgtagatcttgaaaagcaaataaaaaatgttatata 30394254  T
Q  100 gaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaagatcc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30394255 gaatgtcaagattaatatcgtttcttcaagcaatgtccttgttcatagcaaacaaaaggatcc 30394317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 33866340 - 33866174
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  33866340 tgttagtaatcaaggaatcccaaggattaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccatagtgacccatagg 33866241  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33866240 agagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 33866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 33869487 - 33869321
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  33869487 tgttagtaatcaaggaatcccaaagataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatatccatagtgactcatagg 33869388  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  33869387 agagtaaactagatttaacaaaagatagtgaatgcgtacaatagtgttcctatatatagagattagt 33869321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 24544859 - 24544733
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||  |||||| | ||| ||||| ||||||||| |||||  ||||||||     
T  24544859 tgttagtaatcatggaatcccaaggataaagatcatagtgataagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagt 24544760  T
Q  263 agagtaaacttgatttaacaaaagata 289  Q
    |||||||||| ||||| | ||||||||    
T  24544759 agagtaaactagatttgataaaagata 24544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 14619155 - 14618998
Alignment:
Q  171 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 270  Q
    |||||||||||||||||||||| || ||||  |||| ||||| ||||||||||   |||||||||||||||||| |||||| ||||||||||||| | ||    
T  14619155 atcaaggaatcccaaggataaaaatgatagatatcaactagagagagagcatagtagtattcatgtgggagataaccatagagactcataggagaatcaa 14619056  T
Q  271 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
     | ||||| | |||||||| ||||   |||||  ||||||||||||||||||| |||||    
T  14619055 -tagatttgataaaagataatgaaatgatacatgagtgttcctatatatagagtttagt 14618998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 14611315 - 14611158
Alignment:
Q  171 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 270  Q
    |||||||||||  || ||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||| |||||| ||||||||||| | | ||    
T  14611315 atcaaggaatctgaaagataaagatcatagatatcagctagagagagagcatagtagtattcatgtgggagataaccatagagactcataggataatcaa 14611216  T
Q  271 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
     |  |||| | |||||||| ||||   |||||  ||||||||||||||||||| |||||    
T  14611215 -tatatttgataaaagataatgaaatgatacacgagtgttcctatatatagagtttagt 14611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 32080169 - 32080076
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 265  Q
    ||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||||| |||||| | | || |||||||||||||    
T  32080169 aatcatggaatcccatggataaagatcatagtgatcagctag--agagagcatagtagtattcatgtgagagataactacagagactcataggaga 32080076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 1088762 - 1088809
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  1088762 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 1088809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 19645409 - 19645456
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  19645409 aaaagataatgaatgagtacaatagtgttcttatatatagagattagt 19645456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 5377000 - 5376952
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 329  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  5377000 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 5376952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 5378855 - 5378807
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 329  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  5378855 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 5378807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 30488675 - 30488623
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaag 215  Q
    ||||| |||||| |||||| ||||||||||||||||| | |||||| ||||||    
T  30488675 tgttactaatcatggaatctcaaggataaagatcatattaatcagcaagaaag 30488623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 6456 - 6301
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaactt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatagatgtattcatgtgggagatacccatagtgactcataggagagtaaactt 6357  T
Q  274 gatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6356 gatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagt 6301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 164 - 329
Target Start/End: Original strand, 39787050 - 39787215
Alignment:
Q  164 gttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagga 263  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39787050 gttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgacttatagga 39787149  T
Q  264 gagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    ||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  39787150 gagtaaactagatttaacaaaagacagtgaatgagtaaaatagtgttcctatatatagagattagt 39787215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 21637131 - 21637222
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    ||||| ||||||||| |||||||||||||| |||||||  ||||||||| |||| | |||||||||||| |||||||||||| |||| ||||    
T  21637131 aatcatggaatcccatggataaagatcataatgatcagtaagaaagagaacataagagtattcatgtggaagatacccatagagacttatag 21637222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 20012925 - 20013002
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||||||||||| |||||||||||||||| | ||||||  |||||| | ||| ||||||||||||||| |||||    
T  20012925 aaggaatcccaaggatgaagatcatagtgatcaccaagaaagcaagcataagagtactcatgtgggagatactcatag 20013002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 33690043 - 33689981
Alignment:
Q  227 gtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaagata 289  Q
    ||||||||||||||||||||||||| ||||||||  ||||| || | ||||| | ||||||||    
T  33690043 gtattcatgtgggagatacccatagagactcataatagagtgaattagatttgataaaagata 33689981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 5653163 - 5653288
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  5653163 tgttagtaatcatggaatgccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatacccacagtgactcatagg 5653262  T
Q  263 agagtaaacttgatttaacaaaagat 288  Q
    |||||||||| ||||| | |||||||    
T  5653263 agagtaaactagatttgataaaagat 5653288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 23986006 - 23985849
Alignment:
Q  171 atcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaa 270  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||||||||    ||||||||||||||||| |||||| ||||||||||||| | ||    
T  23986006 atcaaggaatcccaaggataaagatcatagacatcagctagagagagagcatagtaatattcatgtgggagataaccatagagactcataggagaatcaa 23985907  T
Q  271 cttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
     | ||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  23985906 -tagatttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagt 23985849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 51295404 - 51295246
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||      
T  51295404 tgttagtaattatggaatcctaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcatgtgggagatatccatagtgactcataat 51295305  T
Q  263 agagtaaacttgatttaacaaaagatagt-gaatgaatacaatagtgttcctatatata 320  Q
    |||||||||| ||||| | ||||| |||| |||   || || |||||||||||||||||    
T  51295304 agagtaaactagatttgataaaaggtagtagaaatgatgcattagtgttcctatatata 51295246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 3529163 - 3529303
Alignment:
Q  186 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaa 285  Q
    |||||||| ||||||||||||||||||  |||||||||   |||||||||||| | ||| |||||| ||||||||||||| | || | ||||| | ||||    
T  3529163 ggataaaggtcatagtgatcagctaga--gagagcatagtagtattcatgtggaaaataaccatagagactcataggagaatcaa-tagatttgataaaa 3529259  T
Q  286 gatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  3529260 gataatgaatgagtacaatagtgttcctatatatagagattagt 3529303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 18395638 - 18395776
Alignment:
Q  167 agtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagag 266  Q
    |||||||| | ||||||| |||||||| |||||||||| ||| |||||||||||||| | ||||||||||||||||||| ||||  ||||||||| | ||    
T  18395638 agtaatcatgaaatcccacggataaaggtcatagtgattagcaagaaagagagcataagagtattcatgtgggagatactcatatagactcatagtatag 18395737  T
Q  267 taaacttgatttaacaaaagatagtgaatgaatacaatag 306  Q
    | || | ||| | | |||||||||||||||| ||||||||    
T  18395738 tgaa-tagatatgataaaagatagtgaatgagtacaatag 18395776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 24807652 - 24807562
Alignment:
Q  175 aggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggaga 265  Q
    ||||||||||||||||||||||||||  || ||||||| ||||||||||   |||||||||||||||||| |||||| |||||||||||||    
T  24807652 aggaatcccaaggataaagatcatagatattagctagagagagagcatagtagtattcatgtgggagatatccatagagactcataggaga 24807562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 52545105 - 52545182
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||| ||||||||||||||| |||||    
T  52545105 aaggaatcccaaggataaagatcatagtgatcagcaagaaagcgagcataagagtactcatgtgggagatactcatag 52545182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 165 - 261
Target Start/End: Complemental strand, 42665171 - 42665075
Alignment:
Q  165 ttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    |||||||||| | ||| | |||||||||| ||||||||||| ||||||||||||||||| | ||||| || ||||||||||||||||  ||||||||    
T  42665171 ttagtaatcatgaaattctaaggataaaggtcatagtgatcggctagaaagagagcataagagtatttatctgggagatacccatagaaactcatag 42665075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 7040483 - 7040436
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7040483 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 7040436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 23564784 - 23564831
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23564784 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 23564831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 23566458 - 23566505
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23566458 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 23566505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 52520723 - 52520676
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  52520723 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 52520676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 54296550 - 54296503
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  54296550 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagt 54296503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 18393689 - 18393787
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    |||| ||||||| |||||| || |||||||  |||||||||||| | |||||||||| ||| | ||||| ||||  ||||||| ||||| |||||||||    
T  18393689 tgttcgtaatcatggaatctcagggataaatgtcatagtgatcatcaagaaagagagtataagagtatttatgtatgagatactcatagagactcatag 18393787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 18656230 - 18656183
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  18656230 aaaagatgatgaatgagtacaatagttttcctatatatagagattagt 18656183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 20957847 - 20957729
Alignment:
Q  170 aatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaa 269  Q
    ||||| ||||||||| |||||||| ||| |||||||||| || ||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  20957847 aatcatggaatcccagggataaaggtcacagtgatcagcaaggaagagtgcataagagtattcatgtgggagatacccatagtgactcatagtagagtaa 20957748  T
Q  270 acttgatttaacaaaagat 288  Q
    ||| ||||| |||||||||    
T  20957747 actagatttgacaaaagat 20957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 20957617 - 20957557
Alignment:
Q  228 tattcatgtgggagatacccatagtgactcataggagagtaaacttgatttaacaaaagat 288  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  20957617 tattcatgtgggagatacccatagtgactcatagtagagtaaactagatttgacaaaagat 20957557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 29758242 - 29758195
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  29758242 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 29758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 59025 - 58861
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatagg 262  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||| | ||| ||||||||||||||| |||||  ||||||       
T  59025 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattat 58926  T
Q  263 agagtaaacttgatttaacaaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    ||| | || | || || | |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  58925 agaatgaa-taga-ttgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 58861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 19473771 - 19473683
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19473771 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19473683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 19544696 - 19544608
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19544696 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19544608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 19588000 - 19588088
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  || ||| | ||| ||||||||||||||| |||||    
T  19588000 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatag 19588088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 14939755 - 14939672
Alignment:
Q  162 ctgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatac 245  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||  |||||||| ||| |||||| | ||||||    
T  14939755 ctgttagtaatcatggaatcctaaggataaagatcatagtgatcagcaagaaagcaagcatatgagtactcatgtagaagatac 14939672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 31032006 - 31032083
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    ||||||||||||||| ||||||||||||||||||| ||||||  |||||| | ||| ||||||||||||||| |||||    
T  31032006 aaggaatcccaaggacaaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatag 31032083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 30224352 - 30224305
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30224352 aaaagataatgaatgagtacaatagtgttcctatatatagagattagt 30224305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 6428862 - 6428815
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  6428862 aaaagatgatgaatgattacaatagtgttcctatatatagagattagt 6428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 25249128 - 25249081
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  25249128 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagt 25249081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 3375532 - 3375579
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||| ||||||  |||||||| ||||||||||||||||||||||    
T  3375532 aaaagataatgaatgggtacaatagagttcctatatatagagattagt 3375579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 5567548 - 5567501
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| ||||||||| |||||||||||||||||||||    
T  5567548 aaaagatgatgaatgagtacaatagttttcctatatatagagattagt 5567501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 950082 - 950170
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||||||| ||| |||||  |||| ||||||||||||||||  |||||   | |||||| |||||||||| | |||||| |||||    
T  950082 tgttagtaatcatggattcccagagatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatag 950170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 8961 - 9073
Alignment:
Q  176 ggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcataggagagtaaacttga 275  Q
    |||||| || |||||||||| ||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||  ||||||||| ||| | ||||| |    
T  8961 ggaatctcagggataaagattataatgatcagcaagaaagagaacataagagtattcatgtggaagatacccataaggactcatagtagaatgaacttta 9060  T
Q  276 tttaacaaaagat 288  Q
    ||| | |||||||    
T  9061 tttgataaaagat 9073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 6789742 - 6789695
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6789742 aaaagatagtgaatgagtacaatagtattcctatatatagagattagt 6789695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 9032695 - 9032793
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatagtgactcatag 261  Q
    ||||||| |||| | ||||||| ||||||||  |||| |||||||| | ||||||| |||| |  ||||||||||||||||||||||||  ||||||||    
T  9032695 tgttagttatcatgaaatcccagggataaagtacataatgatcagcaaaaaagagaacatacgaatattcatgtgggagatacccatagaaactcatag 9032793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 1140123 - 1140076
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatatagagattagt 329  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  1140123 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagt 1140076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 17402891 - 17402939
Alignment:
Q  282 aaaagatagtgaatgaatacaatagtgttcctatatat-agagattagt 329  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  17402891 aaaagatattgaatgagtacaatagtgttcctatatataagagattagt 17402939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 25836589 - 25836524
Alignment:
Q  186 ggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtgggagatacccatag 251  Q
    |||||||| ||| |||||||||| |||||| | ||||| | ||||||||||| ||||| |||||||    
T  25836589 ggataaaggtcaaagtgatcagcaagaaagggtgcataagagtattcatgtgagagatgcccatag 25836524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 28593 - 28524
Alignment:
Q  168 gtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcatgtg 237  Q
    ||||||| ||||||| |||||||||| ||||| |||||||  ||||||||||| || | |||||||||||    
T  28593 gtaatcatggaatccaaaggataaaggtcatattgatcagaaagaaagagagcgtaagagtattcatgtg 28524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 15798 - 15746
Alignment:
Q  163 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaag 215  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||| ||||||    
T  15798 tgttagtaatcatggaatctcaaggataaagatcatagcaatcagcaagaaag 15746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 39373 - 39332
Alignment:
Q  174 aaggaatcccaaggataaagatcatagtgatcagctagaaag 215  Q
    |||||||| |||| ||||||||||||||||||||| ||||||    
T  39373 aaggaatctcaagaataaagatcatagtgatcagcaagaaag 39332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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