View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_low_12 (Length: 273)
Name: NF7868_low_12
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 934241 - 933987
Alignment:
| Q |
1 |
tattccctgactgcgaccccccattgttaacacaatctccattagcagtatttggaaatttcagcattgaaggagaatcatgatcaacatactttctctt |
100 |
Q |
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| T |
934241 |
tattccctgactgcgaccccccattgttaacacaatctccattagcagtatttggaaatttcagcattgaaggagaatcatgatcaacatactttctctt |
934142 |
T |
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| Q |
101 |
acactcttgtcgaaacttccctgattggcacccttcattatgactactttccaacaatttcttaacatgatcaccgtcactttctttgctcaatttgtta |
200 |
Q |
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| T |
934141 |
acactcttgtcgaaacttccctgattggcacccttcattatgactactttccaacaatttcttaacatgatcaccgtcactttctttgctcaatttgtta |
934042 |
T |
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| Q |
201 |
acacaaacaccatcactttctttgctcaaacgaggttgaatccgaacatgcaaac |
255 |
Q |
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| T |
934041 |
acacaaacaccatcactttctttgctcaaacgaggttgaatccgaacatgcaaac |
933987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 33957766 - 33957572
Alignment:
| Q |
35 |
atctccattagcagtatttggaaatttcagcattgaaggagaatcatgatcaacatactttctcttacactcttgtcgaaacttccctgattggcaccct |
134 |
Q |
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| T |
33957766 |
atctccattagcagtatgtggaaattccggcattgatgtagtatcttcatcaacatacttttttttacgctcttgtcgaaacttccccgattggcacccc |
33957667 |
T |
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| Q |
135 |
tcattatgactactttccaacaatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactttctttgctcaa |
229 |
Q |
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| T |
33957666 |
tccttaggactactctccaacaagttgttcacacaatcgccatcactttccttgctcaatttgttaacacaatcaccgtcactttccttgctcaa |
33957572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 33957574 - 33957500
Alignment:
| Q |
155 |
caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactttctttgctcaa |
229 |
Q |
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| T |
33957574 |
caatttgttaacacggtcactatcactttctttgctcaatttgttaacacagtcaccatcactttccttgctcaa |
33957500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 33957610 - 33957536
Alignment:
| Q |
155 |
caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatcactttctttgctcaa |
229 |
Q |
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| T |
33957610 |
caatttgttaacacaatcaccgtcactttccttgctcaatttgttaacacggtcactatcactttctttgctcaa |
33957536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 934292 - 934232
Alignment:
| Q |
64 |
gcattgaaggagaatcatgatcaacatactttctcttacactcttgtcgaaacttccctga |
124 |
Q |
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| T |
934292 |
gcatcgaaggagtatcatcatcaacatactttctcttacactcttgtcgaatattccctga |
934232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 33957502 - 33957406
Alignment:
| Q |
155 |
caatttcttaacatgatcaccgtcactttctttgctcaatttgttaacacaaacaccatc---actttctttgctcaaacgaggttgaatccgaaca |
248 |
Q |
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| T |
33957502 |
caatttattaacatagtcactatcactttcttttcccaatttgttaacataatcactatcactactctctttgctgaaccgaggttgaatccgaaca |
33957406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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