View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_low_2 (Length: 635)
Name: NF7868_low_2
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 48697115 - 48697511
Alignment:
| Q |
17 |
agaatttaagttcattaaggaatccataaaccttaacatccaatctcaattcaattgaccannnnnnnaatcactagcccatgcgttccttgaactaggt |
116 |
Q |
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| T |
48697115 |
agaatttaagttctttaaggaatccataaaccttaacatccaatctcaattcaattgaccattttttta-tcactaacccatgcgttccctgaactaggt |
48697213 |
T |
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| Q |
117 |
atttgaattgttaggttcacagccatcacacgacnnnnnnnatttcaaaaaagtttactaagcttgattcttccaaggtcagtgatgtatgtaaatagta |
216 |
Q |
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| T |
48697214 |
atttgaattgttaggttcacagccatcacacgactttttttatttcaaaaaagtttactaagcttgattcttccaaggtcagtgatgtatgtaaatagta |
48697313 |
T |
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| Q |
217 |
actgagnnnnnnnattggaaatttctggtaagcatttcaatctcagttttaggctgcgtgagatactaaaaattaatctgaattctgctaaaatatgtca |
316 |
Q |
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| T |
48697314 |
actgagtttttttattggaaatttctggtaagcatttcaatctcagttttaggctgcgtgagatactaaaaattaatctgaattctgctcaaatatgtca |
48697413 |
T |
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| Q |
317 |
ttttaagatctgtttacttttttagttccatcactttcacaagtatcaattttcaaaacaaagaccttacatgccttgtgtgtttccttagcaaaggt |
414 |
Q |
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| T |
48697414 |
ttttaagatctgtttacttttttagttccatcactttcacaagtatcaattttcaaaacaaagaccttgcatgccttgtgtgtttccttagcaaaggt |
48697511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 448 - 622
Target Start/End: Original strand, 48697514 - 48697685
Alignment:
| Q |
448 |
catggctttagaatttacctataaatagaacctctatgatgccactttatcaattccaatacaaatacaaataaacaccaagatacgtttctaagagaga |
547 |
Q |
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| T |
48697514 |
catggctttagaatttacctataaatagaacctctatgatgccactttatcaattcaaatacaaatacaaataaaaaccaagatacgtttctatgagaga |
48697613 |
T |
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| Q |
548 |
tcactaattaactaagccttgattttcattcaaaatatggatacaagaatgaattcctcctcggtcacattcatc |
622 |
Q |
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| T |
48697614 |
tcactaattaactaagccttgattttcattcaaaatatggatacaagaatgaat---tcctcggtcacattcatc |
48697685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 286 - 421
Target Start/End: Original strand, 48700364 - 48700495
Alignment:
| Q |
286 |
aaattaatctgaattctgctaaaatatgtcattttaagatctgtttacttttttagttccatcactttcacaagtatcaattttcaaaacaaag-acctt |
384 |
Q |
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| T |
48700364 |
aaattaatctgaattatgctcaaatatgtcattttaag-tca---tactttattagtaccatcactttcataagtatcaatttt-aaatcaaagaatctt |
48700458 |
T |
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| Q |
385 |
acatgccttgtgtgtttccttagcaaaggtacgagtt |
421 |
Q |
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| T |
48700459 |
ccctgccttgtgtgtttccttagaaaaggtatgagtt |
48700495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 48693301 - 48693459
Alignment:
| Q |
230 |
attggaaatttctggtaagcatttcaatctcagttttaggctgcgtgagatactaaaaattaatctgaattctgctaaaatatgtcatttta-------- |
321 |
Q |
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| T |
48693301 |
attggaaatttttggtaggaaattcaacctcagcttcaggctgcgtgaaacatcataaattaatctgaattctgctcaaatatgtcattttaagtagtcc |
48693400 |
T |
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| Q |
322 |
agatctgtttacttttttagttccatcactttcacaagtatcaattttcaaaacaaaga |
380 |
Q |
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| T |
48693401 |
agatctctttactttattagtatcatcactttcataagtatcatttttcaaatcaaaga |
48693459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 501
Target Start/End: Original strand, 48687222 - 48687283
Alignment:
| Q |
440 |
tagtgtcacatggctttagaatttacctataaatagaacctctatgatgccactttatcaat |
501 |
Q |
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| T |
48687222 |
tagtgtcacatggttttagaatttacctataaatggaacatctataatgccacttcatcaat |
48687283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 48687042 - 48687104
Alignment:
| Q |
261 |
agttttaggctgcgtgagatactaaaaattaatctgaattctgctaaaatatgtcattttaag |
323 |
Q |
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| T |
48687042 |
agtttaaggctgcgtgacatattacaaattagtctgaattctgctcaaatatgtcattttaag |
48687104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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