View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_low_4 (Length: 500)
Name: NF7868_low_4
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 92 - 487
Target Start/End: Original strand, 8347723 - 8348129
Alignment:
| Q |
92 |
tgttactcaagatcaaccactaaactgtaacaacgtggatggtggtcagggtttaaaccttgtatctttttctcaaatttatttgaatatcctagactct |
191 |
Q |
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| T |
8347723 |
tgttactcaagatcaaccactaaactgtaacaacgaggatggtggtcagggtttaaaccctatatctttttctcaaatttatttgaatatcctagactct |
8347822 |
T |
|
| Q |
192 |
caactgaatcatttgagttatagacatatcgaacacattttttatattttccttgaagnnnnnnnn-----------ataacactactagtaataaaggg |
280 |
Q |
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| T |
8347823 |
caactgaaccatttgagttatagacatatcgaacacattttttatattttccttgaagtatttcaatgagaatttttataacattactagtaataaaggg |
8347922 |
T |
|
| Q |
281 |
aannnnnnnncattcccttgataaaaattgtgtggaaagaataagaaatttgaatatagtataacattgttactattatcttatctctctatgcattggc |
380 |
Q |
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| T |
8347923 |
aatattttttcattaccttgataaaaattgtgtggaaagaataagaaatttgaatatagtataacattgttactattatcttatctctctatgcattggc |
8348022 |
T |
|
| Q |
381 |
caaagtaatacaaaactgaggggaaaaaattgtgaaatgaaatagactttttccaataaactgaatggacattcaatgattataagagcttcaattgctt |
480 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348023 |
caaagtaatacaaaactgagggggaaaatttgtgaaatgaaatagactttttccaataaactgaatggacattcaatgattataagagcttcaattgctt |
8348122 |
T |
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| Q |
481 |
ttttctc |
487 |
Q |
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||||||| |
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| T |
8348123 |
ttttctc |
8348129 |
T |
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