View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7868_low_6 (Length: 417)

Name: NF7868_low_6
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7868_low_6
NF7868_low_6
[»] chr8 (10 HSPs)
chr8 (23-405)||(8849185-8849567)
chr8 (201-377)||(11232306-11232480)
chr8 (201-364)||(20301307-20301468)
chr8 (201-364)||(21087939-21088100)
chr8 (181-233)||(37868165-37868217)
chr8 (268-371)||(15042826-15042931)
chr8 (164-233)||(31079638-31079707)
chr8 (317-373)||(6462995-6463051)
chr8 (164-232)||(10615015-10615083)
chr8 (317-377)||(11232185-11232245)
[»] chr1 (15 HSPs)
chr1 (200-373)||(27413384-27413555)
chr1 (201-371)||(26176947-26177115)
chr1 (164-233)||(12376513-12376582)
chr1 (267-371)||(16162972-16163076)
chr1 (274-364)||(5109296-5109386)
chr1 (180-233)||(12325388-12325441)
chr1 (200-241)||(17412499-17412540)
chr1 (267-364)||(51460383-51460480)
chr1 (288-364)||(8870872-8870948)
chr1 (267-363)||(25145661-25145757)
chr1 (201-364)||(38733197-38733354)
chr1 (164-237)||(49142887-49142961)
chr1 (324-373)||(4098161-4098210)
chr1 (317-365)||(2120122-2120170)
chr1 (269-373)||(4112949-4113053)
[»] chr7 (13 HSPs)
chr7 (183-367)||(36277086-36277267)
chr7 (201-373)||(25620173-25620343)
chr7 (201-253)||(31485536-31485588)
chr7 (182-233)||(1936206-1936257)
chr7 (192-342)||(22574669-22574816)
chr7 (267-377)||(21861327-21861437)
chr7 (317-366)||(18826479-18826528)
chr7 (82-162)||(40898921-40899002)
chr7 (310-363)||(44342913-44342966)
chr7 (317-373)||(21821843-21821899)
chr7 (325-377)||(21861562-21861614)
chr7 (268-364)||(28080710-28080806)
chr7 (325-377)||(40898714-40898766)
[»] chr3 (9 HSPs)
chr3 (267-364)||(4155370-4155467)
chr3 (165-364)||(13574761-13574959)
chr3 (270-373)||(54567929-54568032)
chr3 (267-373)||(20303326-20303432)
chr3 (267-373)||(45828056-45828162)
chr3 (314-366)||(26272312-26272364)
chr3 (317-377)||(8142638-8142698)
chr3 (317-373)||(22729137-22729193)
chr3 (82-161)||(54368521-54368601)
[»] chr6 (6 HSPs)
chr6 (171-231)||(27993488-27993548)
chr6 (201-377)||(13353234-13353408)
chr6 (201-377)||(33796359-33796533)
chr6 (174-253)||(10313900-10313978)
chr6 (317-367)||(3680055-3680105)
chr6 (310-367)||(8001534-8001591)
[»] chr4 (12 HSPs)
chr4 (267-373)||(22231249-22231355)
chr4 (170-233)||(12005551-12005615)
chr4 (317-377)||(41743126-41743186)
chr4 (325-368)||(50870480-50870523)
chr4 (317-368)||(53828514-53828565)
chr4 (323-364)||(2516245-2516286)
chr4 (317-378)||(37836112-37836173)
chr4 (267-364)||(40717382-40717479)
chr4 (82-161)||(6218444-6218524)
chr4 (325-373)||(21685035-21685083)
chr4 (317-373)||(35796968-35797024)
chr4 (325-377)||(53559289-53559341)
[»] scaffold0519 (1 HSPs)
scaffold0519 (201-377)||(1949-2123)
[»] chr5 (7 HSPs)
chr5 (176-253)||(11682295-11682372)
chr5 (79-162)||(60091-60175)
chr5 (268-367)||(38731780-38731879)
chr5 (319-373)||(15480596-15480650)
chr5 (317-373)||(24531636-24531692)
chr5 (82-161)||(32908717-32908797)
chr5 (267-363)||(43117694-43117790)
[»] scaffold0692 (1 HSPs)
scaffold0692 (203-373)||(5633-5801)
[»] scaffold0459 (1 HSPs)
scaffold0459 (201-255)||(13251-13305)
[»] scaffold0366 (2 HSPs)
scaffold0366 (201-255)||(10892-10946)
scaffold0366 (201-255)||(14558-14612)
[»] chr2 (7 HSPs)
chr2 (201-255)||(44404038-44404092)
chr2 (201-377)||(14466287-14466461)
chr2 (164-237)||(33381028-33381101)
chr2 (267-373)||(16419304-16419410)
chr2 (310-364)||(27897590-27897644)
chr2 (268-373)||(17719437-17719542)
chr2 (201-233)||(36352038-36352070)
[»] scaffold0047 (1 HSPs)
scaffold0047 (267-367)||(12690-12790)
[»] scaffold0481 (1 HSPs)
scaffold0481 (84-158)||(3472-3547)
[»] scaffold0048 (1 HSPs)
scaffold0048 (325-375)||(82111-82161)
[»] scaffold0045 (1 HSPs)
scaffold0045 (267-369)||(41147-41249)
[»] scaffold0092 (1 HSPs)
scaffold0092 (267-376)||(5689-5798)
[»] scaffold0041 (2 HSPs)
scaffold0041 (82-162)||(67282-67363)
scaffold0041 (325-377)||(67518-67570)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 405
Target Start/End: Complemental strand, 8849567 - 8849185
Alignment:
Q  23 acgatcaagtgccaagtatttatgaaatcaactactaattgaactcacacaattaaaactcttagaaatcgtgattgaatctaacataatcccctaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||  ||||     
T  8849567 acgatcaagtgccaagtatttatgaaatcaactactaattgaactcacacaattaaaactcttaaaaatcgtggttgaatctaacataatcccacaaatg 8849468  T
Q  123 cggtttgtaggtgaagagtgtccccacttataaacacatgaacatggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgacca 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  8849467 cggtttgtaggtgaagagtgtccccacttataaacacatggacatggtcatgccatattttgtctgatttgagactctttaacacaccccctcacgacca 8849368  T
Q  223 acactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatat 322  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  8849367 acactattgggtttggttcatagatataaatggcggaaggtacgcgacagcggaaaactgatagtaggtggctcaataaattttgatgagactttgatat 8849268  T
Q  323 catcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaaggatgaattagcccaatatttcaacatatt 405  Q
    |||||||||||| |||||||||||||||||||| |||||||||| | |||| ||||||| |||||||||||||||||||||||    
T  8849267 catcttagaaatcgtagttggacgtaacacaacaacacaaaatcagcttgtgaggatgagttagcccaatatttcaacatatt 8849185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 11232306 - 11232480
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  |  || |||||||||||| ||| ||  ||||||| ||||     
T  11232306 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtg--actcgatagcggaaacctgataacaggtggcccaatg 11232403  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  11232404 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 11232480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 20301468 - 20301307
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| |||| |||||| | ||  ||| ||  |||||||||| ||| ||| ||||||| ||||     
T  20301468 ttaacacaccccctcacgaccagcactattgggcttggttcgtagacataaatggtgggtggtccg--atagcggaaacctgatagcaggtggcccaatg 20301371  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
     || |||  ||| || ||||| |||||||||||| || ||||| | |||||||||| |||||||    
T  20301370 gatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaacacaacctcacaaaa 20301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 21088100 - 21087939
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| |||| |||||| | ||  ||| ||  |||||||||| ||| ||| ||||||| ||||     
T  21088100 ttaacacaccccctcacgaccagcactattgggcttggttcgtagacataaatggtgggtggtccg--atagcggaaacctgatagcaggtggcccaatg 21088003  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
     || |||  ||| || ||||| |||||||||||| || ||||| | |||||||||| |||||||    
T  21088002 gatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaacacaacctcacaaaa 21087939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 37868165 - 37868217
Alignment:
Q  181 tttgtctgatttgagactctttaacacacctcatcacgaccaacactattggg 233  Q
    |||||||||| | ||||||||||||||||  | ||||||||||||||||||||    
T  37868165 tttgtctgatgttagactctttaacacacaccctcacgaccaacactattggg 37868217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 15042826 - 15042931
Alignment:
Q  268 gatagcggaaaactgttagtaggtggctcaataaattttggtgaga--ctttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaat 365  Q
    ||||||||||| ||| ||| ||||||| |||| ||| |||| ||||  || ||||| |||||||||||| || ||| | | |||||||||| |||||||     
T  15042826 gatagcggaaacctgatagcaggtggcccaatgaatcttggagagaggctatgataacatcttagaaatcgtggttaggcctaacacaaccccacaaaac 15042925  T
Q  366 cggttt 371  Q
    ||||||    
T  15042926 cggttt 15042931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 31079638 - 31079707
Alignment:
Q  164 acatggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattggg 233  Q
    ||||| ||| ||||||||||  | ||| || |||||||||||||||||| ||||||||| | ||||||||    
T  31079638 acatgttcaagccatattttacccgatgtgggactctttaacacacctcctcacgaccatccctattggg 31079707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 6463051 - 6462995
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||||||||||| ||||||| ||||| | |||||||||| ||||||| | ||||||    
T  6463051 tgatatcatcttaaaaattgtggttgggcataacacaaccgcacaaaacctgtttgt 6462995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 10615015 - 10615083
Alignment:
Q  164 acatggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattgg 232  Q
    ||||| ||||| |||||||| || ||| || |||||||||||||||  | |||| ||||||||||||||    
T  10615015 acatgttcatgtcatattttatccgatgtgggactctttaacacacaccctcacaaccaacactattgg 10615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 11232185 - 11232245
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  11232185 tgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 11232245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 373
Target Start/End: Complemental strand, 27413555 - 27413384
Alignment:
Q  200 tttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaat 299  Q
    |||||||||||   |||||||||||||||||||| ||||||| | || |||||| | ||  ||  | |||||||||||| ||| ||  ||||||   |||    
T  27413555 tttaacacaccctctcacgaccaacactattgggcttgattcgtggacataaatggtgggtgg--cccgatagcggaaatctgataacaggtggtctaat 27413458  T
Q  300 aaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    | || |||| ||| || |||||||||||||||||| || ||||||| |||||||||| ||||||||||| ||||    
T  27413457 agatcttggagaggctctgatatcatcttagaaatcgtggttggacctaacacaacctcacaaaatcggcttgt 27413384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 371
Target Start/End: Complemental strand, 26177115 - 26176947
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||  ||| ||| | ||||||||| | ||  ||| ||  |||||||||| ||| ||| ||||||| ||||     
T  26177115 ttaacacaccccgtcacgaccagcactattggacttggttcgtggatataaatggtgggtggtccg--atagcggaaatctgatagcaggtggcccaatg 26177018  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggttt 371  Q
     || |||| ||| || |||||||||||||||||| |  ||||| | |||||||||| ||||||| ||||||    
T  26177017 gatcttggagaggctctgatatcatcttagaaatcgcggttgggcctaacacaaccccacaaaaccggttt 26176947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 12376513 - 12376582
Alignment:
Q  164 acatggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattggg 233  Q
    ||||| ||||| ||| |||||| |||| ||||||||||||||||||  | ||||||||||||||||||||    
T  12376513 acatgttcatgtcatcttttgtttgatgtgagactctttaacacacaccctcacgaccaacactattggg 12376582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 16163076 - 16162972
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||| ||| ||| ||||||| || |  || |||| ||| |||||||||||||||| ||||||| ||||    |||||||||| |||||||||    
T  16163076 cgatagcggaaacctgatagcaggtggcccattggatcttggagaggctttgatatcatcttaaaaattgtggttgagtctaacacaaccccacaaaatc 16162977  T
Q  367 ggttt 371  Q
    |||||    
T  16162976 ggttt 16162972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 5109386 - 5109296
Alignment:
Q  274 ggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    ||||| ||| ||| |||||||||||  ||| |||| |||||| ||||| ||||||| |||||||| |||||| |||||||| | |||||||    
T  5109386 ggaaacctgatagaaggtggctcaacgaatcttggagagactctgataccatcttaaaaattgtaattggacctaacacaatcccacaaaa 5109296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 12325388 - 12325441
Alignment:
Q  180 ttttgtctgatttgagactctttaacacacctcatcacgaccaacactattggg 233  Q
    |||||| |||| ||||||||||||||||||  | ||||||||||||||||||||    
T  12325388 ttttgtttgatgtgagactctttaacacacaccctcacgaccaacactattggg 12325441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 17412540 - 17412499
Alignment:
Q  200 tttaacacacctcatcacgaccaacactattgggtttgattc 241  Q
    ||||||||||| |||||||||||||||||||||| |||||||    
T  17412540 tttaacacaccccatcacgaccaacactattgggcttgattc 17412499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 51460383 - 51460480
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    |||||||||||| ||| ||| ||||||| ||||  || |||| ||| || ||||||||| ||||||||| | ||||| | |||||||||| |||||||    
T  51460383 cgatagcggaaacctgatagcaggtggcccaatggatcttggagaggctctgatatcattttagaaattatggttgggcctaacacaaccccacaaaa 51460480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 8870872 - 8870948
Alignment:
Q  288 aggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    ||||||| ||||  || |||| |||||| ||||| |||||||||||| || ||||||| |||||||||| |||||||    
T  8870872 aggtggcccaatggatattggagagactctgataccatcttagaaatggtggttggacctaacacaaccccacaaaa 8870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 25145661 - 25145757
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaa 363  Q
    ||||| |||||| ||| ||| |||||| |||||| || |||| ||| || ||||||||||||||||||  | ||||| | |||||||||| ||||||    
T  25145661 cgataacggaaacctgatagcaggtgggtcaatagatcttggagaggctctgatatcatcttagaaatcatggttgggcctaacacaaccccacaaa 25145757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 364
Target Start/End: Complemental strand, 38733354 - 38733197
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||||| ||||||||| |||||||||| ||  ||| ||||||||||| | ||  ||      |||||||||| ||| ||| ||||||  ||||     
T  38733354 ttaacacacctcttcacgaccagcactattgggcttagttcgtagatataaatggtgggtgg------atagcggaaacctgatagcaggtggtccaatg 38733261  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
     || |||| |||||| ||||| |||||||||||| || |||| || |||||||| | |||||||    
T  38733260 gatcttggagagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaa 38733197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 49142961 - 49142887
Alignment:
Q  164 acatggtcatgccatattttgtctgatttgagactctttaacacac-ctcatcacgaccaacactattgggtttg 237  Q
    ||||| ||||||||||||||||||||| || |||||||||| |||| | | ||| ||||||  ||||||||||||    
T  49142961 acatgttcatgccatattttgtctgatgtgggactctttaatacacacccctcatgaccaaacctattgggtttg 49142887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 4098161 - 4098210
Alignment:
Q  324 atcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    |||||||||||||| ||||| | |||||||| ||||||||| ||||||||    
T  4098161 atcttagaaattgtggttgggcctaacacaatcacacaaaaccggtttgt 4098210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 2120170 - 2120122
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaat 365  Q
    |||||||||||||||||| ||  |||||| |||||||||| ||||||||    
T  2120170 tgatatcatcttagaaatcgtgattggacctaacacaaccccacaaaat 2120122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 373
Target Start/End: Original strand, 4112949 - 4113053
Alignment:
Q  269 atagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcgg 368  Q
    |||||||||| ||| |||  |||||||||||  || |||| ||| ||  |||| |||||||||||| || ||||| | |||||||||| ||||||| |||    
T  4112949 atagcggaaacctgatagatggtggctcaatggatcttggagaggctccgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgg 4113048  T
Q  369 tttgt 373  Q
     ||||    
T  4113049 cttgt 4113053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 367
Target Start/End: Original strand, 36277086 - 36277267
Alignment:
Q  183 tgtctgatttgagactctttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactg 282  Q
    |||||||| |||||||||| |||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  ||| ||  |||||||||| |||    
T  36277086 tgtctgatgtgagactctt-aacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccg--atagcggaaacctg 36277182  T
Q  283 ttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcg 367  Q
     ||||||||||| ||||  || |||| ||| || ||||| |||||||||||| || |||||   |||||||||| ||||||||||    
T  36277183 atagtaggtggcccaatggatcttggagaggctctgataacatcttagaaatcgtggttgggactaacacaaccccacaaaatcg 36277267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 25620343 - 25620173
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||  | |||||||||||||||||||| ||| ||| | || |||||| | ||  ||  | | |||||||||| ||| ||| ||||||| ||||     
T  25620343 ttaacacacaccttcacgaccaacactattgggcttggttcgtggacataaatggtgggtgg--cccaatagcggaaacctgatagcaggtggcccaatg 25620246  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||    
T  25620245 gatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgt 25620173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 31485536 - 31485588
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaat 253  Q
    |||||||||| | |||||| ||||||||||||||||||||| | |||||||||    
T  31485536 ttaacacaccccctcacgaacaacactattgggtttgattcgtggatataaat 31485588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 1936206 - 1936257
Alignment:
Q  182 ttgtctgatttgagactctttaacacacctcatcacgaccaacactattggg 233  Q
    |||| |||| || |||||||||||||||||| ||| ||||||||||||||||    
T  1936206 ttgtttgatgtgtgactctttaacacacctcttcatgaccaacactattggg 1936257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 342
Target Start/End: Complemental strand, 22574816 - 22574669
Alignment:
Q  192 tgagactctttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggt 291  Q
    |||||||||| |||||||| | |||||||||||||||||||| ||| ||| |||| |||||| | ||  |||   ||||||| |||| ||| ||| ||||    
T  22574816 tgagactctt-aacacaccacctcacgaccaacactattgggcttggttcgtagacataaatggtgggtggt--ccgatagctgaaacctgatagcaggt 22574720  T
Q  292 ggctcaataaattttggtgagactttgatatcatcttagaaattgtagttg 342  Q
    ||| ||||  || |||| |||||| | ||| |||| |||||||||| ||||    
T  22574719 ggcccaatggatcttggagagactcttataccatcatagaaattgtggttg 22574669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 21861437 - 21861327
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||| ||| ||  ||||||| ||||  || |||| ||| || ||||| |||||||||||| || ||||| | |||||||| | ||||||| |    
T  21861437 cgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaatcccacaaaacc 21861338  T
Q  367 ggtttgtaagg 377  Q
    || ||||||||    
T  21861337 ggcttgtaagg 21861327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 18826479 - 18826528
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    ||||||||||||||||||| | |||| || |||||||||| |||||||||    
T  18826479 tgatatcatcttagaaattatggttgaacctaacacaaccccacaaaatc 18826528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 40898921 - 40899002
Alignment:
Q  82 tcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacatg 162  Q
    |||||||| ||||||||||  |||||| |||||| |||| || | |||| |||||| || || |||||||||||||||||||    
T  40898921 tcttagaattcgtgattgagcctaacacaatcccataaaaccagcttgtgaggtgatgattgcccccacttataaacacatg 40899002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 44342913 - 44342966
Alignment:
Q  310 gagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaa 363  Q
    |||||||||||| ||||||| ||||||| ||||  | |||||||||||||||||    
T  44342913 gagactttgataccatcttaaaaattgtggttgatcttaacacaaccacacaaa 44342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 21821899 - 21821843
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||| |||||||||||| || ||||| | |||||||| | ||||||||||||||||    
T  21821899 tgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatcggtttgt 21821843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 21861614 - 21861562
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    |||||||||| || ||||| | |||||||||| ||||||||||| ||||||||    
T  21861614 tcttagaaatggtggttgggcctaacacaaccccacaaaatcggcttgtaagg 21861562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 28080806 - 28080710
Alignment:
Q  268 gatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    |||||||||||  || ||| ||||||| ||||| || |||  ||| || |||||||||||||||||| || ||||||  ||||| |||| |||||||    
T  28080806 gatagcggaaacttgatagcaggtggcccaatagatcttgaagaggctctgatatcatcttagaaatcgtggttggatctaacataaccccacaaaa 28080710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 40898714 - 40898766
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    ||||| ||||||| |||||||  ||||||||  ||||||||||||||||||||    
T  40898714 tcttaaaaattgtggttggaccaaacacaactccacaaaatcggtttgtaagg 40898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 4155467 - 4155370
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    |||||||||||| ||| ||| ||||||| |||| ||| |||| |||||| ||||| |||||||||||| || ||||| | |||||||||| |||||||    
T  4155467 cgatagcggaaacctgatagcaggtggcccaatgaatcttggagagactctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaa 4155370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 364
Target Start/End: Original strand, 13574761 - 13574959
Alignment:
Q  165 catggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggta 264  Q
    |||| ||| ||||||||||||| ||| || |||||||||||||||  | ||||||| | |||||||||| ||| ||| | || |||||| | ||  |  |    
T  13574761 catgctcaagccatattttgtccgatgtgggactctttaacacactccctcacgactagcactattgggcttggttcgtggacataaatggtgg--gtga 13574858  T
Q  265 cgcgatagcggaaaactgttagtaggtggctcaataaat-tttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaa 363  Q
    | |||||||||||| ||| ||| ||||||| ||||  || ||   |||| |||||||| ||| ||||||||||| ||||| | |||||||||| ||||||    
T  13574859 cacgatagcggaaacctgatagcaggtggcccaatggatcttaactgaggctttgataccatattagaaattgtggttgggcctaacacaaccccacaaa 13574958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 54568032 - 54567929
Alignment:
Q  270 tagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggt 369  Q
    ||||||||| ||| ||| ||||||||||||  || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| |||     
T  54568032 tagcggaaacctgatagcaggtggctcaatggatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggc 54567933  T
Q  370 ttgt 373  Q
    ||||    
T  54567932 ttgt 54567929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 20303326 - 20303432
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||| ||||| ||| ||| ||||||| ||||  ||||| | ||| || ||||| ||| ||||||||||| ||||||| |||||||||| ||||||| |    
T  20303326 cgatagtggaaacctgatagcaggtggcccaatggattttagagaggctctgataccatattagaaattgtggttggacctaacacaaccccacaaaacc 20303425  T
Q  367 ggtttgt 373  Q
    || ||||    
T  20303426 ggcttgt 20303432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 45828162 - 45828056
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||| ||| ||| ||||||| ||||  || |||| ||| || ||||| ||||||||||||||| || || | |||||||||| ||||||| |    
T  45828162 cgatagcggaaacctggtagcaggtggcgcaatggatcttggagaggctctgataccatcttagaaattgtggtagggcctaacacaacctcacaaaacc 45828063  T
Q  367 ggtttgt 373  Q
    || ||||    
T  45828062 ggcttgt 45828056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 26272312 - 26272364
Alignment:
Q  314 ctttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||||||||||||||| |||||   |||||||||| |||||||||    
T  26272312 ctttgatatcatcttagaaattgtggttgggtctaacacaaccccacaaaatc 26272364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 8142638 - 8142698
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    ||||| |||||||||||| || ||| ||| |||||||||| ||||||| || |||||||||    
T  8142638 tgataccatcttagaaatcgtggttagacctaacacaaccccacaaaaccgatttgtaagg 8142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 22729193 - 22729137
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||| ||||||||||||||| ||||| | |||||||||| ||||||| ||| ||||    
T  22729193 tgataccatcttagaaattgtggttgggcctaacacaacctcacaaaaccggcttgt 22729137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 54368601 - 54368521
Alignment:
Q  82 tcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacat 161  Q
    |||||||||||||| |||  ||||||| || ||| |||| |||| |||| |||||| || || ||||||||||||||||||    
T  54368601 tcttagaaatcgtggttgggtctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccacttataaacacat 54368521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 27993488 - 27993548
Alignment:
Q  171 catgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattg 231  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||  ||||||||||||    
T  27993488 catgccatattttgtctaatgtgagactctttaacacacctcttcacacccaacactattg 27993548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 13353408 - 13353234
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  ||  | |||||||||||| ||| ||  ||||||| ||||     
T  13353408 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgg--cccgatagcggaaacctgataacaggtggcccaatg 13353311  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  13353310 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 13353234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 33796533 - 33796359
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  ||  | |||||||||||| ||| ||  ||||||| ||||     
T  33796533 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgg--cccgatagcggaaacctgataacaggtggcccaatg 33796436  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  33796435 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 33796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 10313978 - 10313900
Alignment:
Q  174 gccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattgggtttgattcatagatataaat 253  Q
    ||||| |||| |||||| ||||||||||||||||| ||| |||| ||||||||||||| ||||  ||| | |||||||||    
T  10313978 gccattttttatctgatgtgagactctttaacaca-ctcctcacaaccaacactattgagtttagttcgtggatataaat 10313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 3680105 - 3680055
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcg 367  Q
    ||||| ||||||||||||||| ||||| | |||||||||| ||||||||||    
T  3680105 tgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcg 3680055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 8001534 - 8001591
Alignment:
Q  310 gagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcg 367  Q
    |||||| ||||| ||||||||||||||| ||||| | ||||||||||  |||||||||    
T  8001534 gagactctgataccatcttagaaattgtggttgggcctaacacaacccaacaaaatcg 8001591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 22231249 - 22231355
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||| ||| ||| ||||||| ||||  ||||||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| |    
T  22231249 cgatagcggaaacctgatagcaggtggcccaatggattttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 22231348  T
Q  367 ggtttgt 373  Q
    || ||||    
T  22231349 ggcttgt 22231355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 12005551 - 12005615
Alignment:
Q  170 tcatgccatattttgtctgatttgagactctttaacacac-ctcatcacgaccaacactattggg 233  Q
    ||||||||||||||||| ||| || ||||||||||||||| | | ||||||||| ||||||||||    
T  12005551 tcatgccatattttgtccgatgtgggactctttaacacacacccctcacgaccagcactattggg 12005615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 41743126 - 41743186
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    ||||| ||| |||||||| || ||||||| ||| |||||| ||||||||||||||||||||    
T  41743126 tgataccatattagaaatggtggttggacctaatacaacctcacaaaatcggtttgtaagg 41743186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 50870480 - 50870523
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcgg 368  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  50870480 tcttagaaattgtggttggacctaacacaaccccacaaaatcgg 50870523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 53828514 - 53828565
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcgg 368  Q
    ||||| ||||||||||||||| ||||| | |||||||||| |||||||||||    
T  53828514 tgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcgg 53828565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 2516286 - 2516245
Alignment:
Q  323 catcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    ||||||||||||||| ||||||| |||||||||| |||||||    
T  2516286 catcttagaaattgtggttggacctaacacaaccccacaaaa 2516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 37836173 - 37836112
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagga 378  Q
    ||||| ||||||||||||||| ||| | | |||||||||| ||||||| ||| |||||||||    
T  37836173 tgataccatcttagaaattgtggttaggcctaacacaaccccacaaaaccggcttgtaagga 37836112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 40717382 - 40717479
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    |||||||||||| ||| | | ||||||| ||||  || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| |||||||    
T  40717382 cgatagcggaaacctgatggcaggtggcccaatggatattggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaa 40717479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 6218524 - 6218444
Alignment:
Q  82 tcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacat 161  Q
    |||||||||||||| ||||  |||||| ||| || |||| |||| |||| |||||| || || ||||||||||||||||||    
T  6218524 tcttagaaatcgtggttgagcctaacacaattccataaaaccggcttgtgaggtgatgattgcccccacttataaacacat 6218444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 21685083 - 21685035
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||||||||||| ||||| | |||||||||| ||||||||||| ||||    
T  21685083 tcttagaaattgtggttgggcttaacacaaccccacaaaatcggcttgt 21685035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 35796968 - 35797024
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||| |||||||||||| |||||||| | |||||||||| |||||||  |||||||    
T  35796968 tgataccatcttagaaatggtagttgggcttaacacaaccccacaaaactggtttgt 35797024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 53559289 - 53559341
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    |||||||||| || ||||| | |||||||||| ||||||||||| ||||||||    
T  53559289 tcttagaaatcgtggttgggcctaacacaaccccacaaaatcggcttgtaagg 53559341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 2123 - 1949
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  |  || |||||||||||| ||| ||  ||||||| ||||     
T  2123 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtg--actcgatagcggaaacctgataacaggtggcccaatg 2026  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  2025 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 1949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 11682295 - 11682372
Alignment:
Q  176 catattttgtctgatttgagactctttaacacacctcatcacgaccaacactattgggtttgattcatagatataaat 253  Q
    ||||||||||||||| ||||||||||||||| |||   |||||||||||||||||||  ||| ||||  |||||||||    
T  11682295 catattttgtctgatgtgagactctttaacataccgtctcacgaccaacactattggacttggttcaaggatataaat 11682372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 60175 - 60091
Alignment:
Q  79 aactcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacatg 162  Q
    ||||||||||||| |||||||  |||||||||| |||  ||| |||| |||| |||||| || || |||||||||||||||||||    
T  60175 aactcttagaaattgtgattgggtctaacataaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacatg 60091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 38731780 - 38731879
Alignment:
Q  268 gatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcg 367  Q
    |||||| |||| ||| ||| |||| ||||||| |||||||  ||| || ||||| |||||||||||| || ||||  | |||||||||| ||||||||||    
T  38731780 gatagcagaaacctgatagcaggtagctcaatgaattttgaagaggctatgatagcatcttagaaatggtggttgtgcctaacacaacctcacaaaatcg 38731879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 15480650 - 15480596
Alignment:
Q  319 atatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||||||||||||||||| ||||| | |||||||||| ||||||| ||| ||||    
T  15480650 atatcatcttagaaattgtggttgggcctaacacaaccccacaaaaccggcttgt 15480596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 24531692 - 24531636
Alignment:
Q  317 tgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    ||||| |||||||||||| || ||||| | |||||||||| ||||||||||| ||||    
T  24531692 tgataccatcttagaaatcgtggttgggcataacacaaccccacaaaatcggcttgt 24531636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 32908717 - 32908797
Alignment:
Q  82 tcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacat 161  Q
    |||||||||||||| |||  |||||||||| |||  ||| ||||||||| |||||| || || | ||||||||||||||||    
T  32908717 tcttagaaatcgtggttgggtctaacataacccctcaaaaccggtttgtgaggtgatgattgcctccacttataaacacat 32908797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 43117790 - 43117694
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaa 363  Q
    |||||||||||| ||| ||| ||||||| ||||| || ||||  || || |||||  ||||||||||| || ||||| | |||||||||| ||||||    
T  43117790 cgatagcggaaacctgatagcaggtggcccaatagatcttggaaaggctctgatactatcttagaaatcgttgttgggcctaacacaaccccacaaa 43117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 373
Target Start/End: Original strand, 5633 - 5801
Alignment:
Q  203 aacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaataaa 302  Q
    |||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  ||| ||  |||||||||| ||| ||| ||||||||||||  |    
T  5633 aacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccg--atagcggaaacctgatagcaggtggctcaatgga 5730  T
Q  303 ttttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgt 373  Q
    | |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| | ||||| ||| ||||    
T  5731 tcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccgcaaaaccggcttgt 5801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 13305 - 13251
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatag 255  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||    
T  13305 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatag 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 10946 - 10892
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatag 255  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||    
T  10946 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatag 10892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 14612 - 14558
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatag 255  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||    
T  14612 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatag 14558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 44404038 - 44404092
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatag 255  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || ||||||||    
T  44404038 ttaacacaccccatcacgaccaacactattgggcttggttcatggacataaatag 44404092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 14466287 - 14466461
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattgggtttgattcatagatataaatagcggaaggtacgcgatagcggaaaactgttagtaggtggctcaata 300  Q
    |||||||||| | ||||||||| |||||||||| ||| ||| | || |||||| | ||  ||  | |||||||||||| ||| ||  | ||||| ||||     
T  14466287 ttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtgg--cccgatagcggaaacctgataacaagtggcccaatg 14466384  T
Q  301 aattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
     || |||| ||| || ||||| |||||||||||| || ||||| | |||||||||| ||||||| ||| ||||||||    
T  14466385 gatcttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaagg 14466461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 33381028 - 33381101
Alignment:
Q  164 acatggtcatgccatattttgtctgatttgagactctttaacacacctcatcacgaccaacactattgggtttg 237  Q
    ||||| ||||||||| ||||||||||| |  | |||||||||||| ||| ||||||||| ||||| ||||||||    
T  33381028 acatgttcatgccatcttttgtctgatgtaggtctctttaacacatctcctcacgaccagcactactgggtttg 33381101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 16419410 - 16419304
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||||||| ||| ||| ||||||| ||||  || |||| ||| || ||||| |||||||||||| || ||||| | ||| |||||| ||||||| |    
T  16419410 cgatagcggaaacctgatagcaggtggcccaatggatcttggagaggctctgataccatcttagaaatcgtggttgggcctaatacaaccccacaaaacc 16419311  T
Q  367 ggtttgt 373  Q
    || ||||    
T  16419310 ggcttgt 16419304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 27897590 - 27897644
Alignment:
Q  310 gagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaa 364  Q
    |||||||||||| |||||||||||| || ||||| | |||||||||| |||||||    
T  27897590 gagactttgataccatcttagaaatggtggttgggcctaacacaaccccacaaaa 27897644  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 17719542 - 17719437
Alignment:
Q  268 gatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatcg 367  Q
    ||||| ||||| ||| ||| |||||||  |||  || |||| |||||||||||| ||||||||||||||| ||||| |  |||||||||  |||||| ||    
T  17719542 gataggggaaacctgatagcaggtggccaaatggatcttggagagactttgataccatcttagaaattgtggttgggccgaacacaacccgacaaaaccg 17719443  T
Q  368 gtttgt 373  Q
    | ||||    
T  17719442 gcttgt 17719437  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 36352038 - 36352070
Alignment:
Q  201 ttaacacacctcatcacgaccaacactattggg 233  Q
    |||||||||| ||||||||||||||||||||||    
T  36352038 ttaacacaccccatcacgaccaacactattggg 36352070  T

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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 367
Target Start/End: Complemental strand, 12790 - 12690
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||| ||  ||| ||||||||||| ||||  || |||| |||||  | ||| ||||||| ||||||| ||||| | ||||||||||||||||||||    
T  12790 cgatagcgaaatcctgatagtaggtggcccaatttatcttggagagacgctaataccatcttaaaaattgtggttgggcctaacacaaccacacaaaatc 12691  T
Q  367 g 367  Q
    |    
T  12690 g 12690  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 3472 - 3547
Alignment:
Q  84 ttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaaca 158  Q
    ||||||||||||||||  ||||||| || |||  ||| |||| |||| ||||||||| ||||||||||||||||||    
T  3472 ttagaaatcgtgattgggtctaacacaaccccacaaaaccggcttgtgaggtgaagattgtccccacttataaaca 3547  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 82161 - 82111
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaa 375  Q
    ||||||||||||| ||||| | |||||||||| ||||||| ||||||||||    
T  82161 tcttagaaattgtggttgggcctaacacaaccccacaaaaccggtttgtaa 82111  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 41147 - 41249
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    |||||||| |||  || ||| ||||||| |||| ||| |||| ||| || ||||| |||||||||||| |||||||  | ||| |||||| |||||||||    
T  41147 cgatagcgcaaacttgatagcaggtggcccaatgaatcttggagaggctctgataccatcttagaaatcgtagttgagcctaatacaaccccacaaaatc 41246  T
Q  367 ggt 369  Q
    |||    
T  41247 ggt 41249  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 376
Target Start/End: Complemental strand, 5798 - 5689
Alignment:
Q  267 cgatagcggaaaactgttagtaggtggctcaataaattttggtgagactttgatatcatcttagaaattgtagttggacgtaacacaaccacacaaaatc 366  Q
    ||||| |||||| ||| ||| ||||||| ||||  ||||||  ||| || ||||| |||||||||||| || |||||   |||||||||| ||||||| |    
T  5798 cgataacggaaacctgatagcaggtggcccaatggattttgaagaggctctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaacc 5699  T
Q  367 ggtttgtaag 376  Q
    || |||||||    
T  5698 ggcttgtaag 5689  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 67363 - 67282
Alignment:
Q  82 tcttagaaatcgtgattgaatctaacataatcccctaaatccggtttgt-aggtgaagagtgtccccacttataaacacatg 162  Q
    |||||||| ||||||||||  |||||| |||||| |||| || | |||| |||||| || || |||||||||||||||||||    
T  67363 tcttagaattcgtgattgagcctaacacaatcccataaaaccagcttgtgaggtgatgattgcccccacttataaacacatg 67282  T

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Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 67570 - 67518
Alignment:
Q  325 tcttagaaattgtagttggacgtaacacaaccacacaaaatcggtttgtaagg 377  Q
    ||||| ||||||| |||||||  ||||||||  ||||||||||||||||||||    
T  67570 tcttaaaaattgtggttggaccaaacacaactccacaaaatcggtttgtaagg 67518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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