View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_low_9 (Length: 375)
Name: NF7868_low_9
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 32717294 - 32717643
Alignment:
| Q |
12 |
tgagatgaagtcaatgaagtctaagcatgcaactgttagtgttgataaaatgcttgctgctttgcaacgtaaggcagcagacaaggaaataaggctggta |
111 |
Q |
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| T |
32717294 |
tgagatgaagtcaatgaagtctaggcatgcaactgttagtgttgataaaatgcttgctgccttgcaacgtaaggcagcagacaaggagaaaaggctggta |
32717393 |
T |
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| Q |
112 |
gaagaagatgaagcactgataaaatcaattttctcgaataattctgaagtttctatcagcagaattcgtgacagacatggtgaaacatccaataataatc |
211 |
Q |
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| T |
32717394 |
gaagaagatgaagcactgataaaatcaattttctcgaataattctgaagtttctatcagcagaattcgtgacagacatggtgaaacatccaataataatc |
32717493 |
T |
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| Q |
212 |
tgaagaggcaaaaaatttccaaagatcttgcagaaaaagccactgacactatgacaaaagccggtttggatgattctgacaaacaaggaaaattgattgg |
311 |
Q |
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| T |
32717494 |
tgaagaggcgaaaaatttccaaagatctttcagaaaaagccgctggtactctgacaaaagccggtttggatgattctgacaaacaaggaaaattgatcgg |
32717593 |
T |
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| Q |
312 |
ccgtcgtcaaaagcctaatcctttggcgatgatttctgttgtcaagaaac |
361 |
Q |
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| T |
32717594 |
cggtcgtcaaaagcctaatcctttggcgatgatttctgttgtcaagaaac |
32717643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 1843084 - 1843168
Alignment:
| Q |
215 |
agaggcaaaaaatttccaaagatcttgcagaaaaagccactgacactatgacaaaagccggtttggatgattctgacaaacaagg |
299 |
Q |
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| T |
1843084 |
agaggcaaaaaatttccgaagatcttcctcgaaaagcaactgacaccttgacaaaagccagtttggatgattctgacaaacaagg |
1843168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 1841112 - 1841151
Alignment:
| Q |
111 |
agaagaagatgaagcactgataaaatcaattttctcgaat |
150 |
Q |
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| T |
1841112 |
agaagaagatgaagcactgataaaatcaattttctcgaat |
1841151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 1839186 - 1839254
Alignment:
| Q |
29 |
agtctaagcatgcaactgttagtgttgataaaatgcttgctgctttgcaacgtaaggcagcagacaagg |
97 |
Q |
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|||||| |||||||||||| ||||||| | ||||||||| || |||||||||| ||||| ||||||| |
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| T |
1839186 |
agtctaggcatgcaactgtcagtgttgctgaaatgcttgtggcgttgcaacgtacagcagcggacaagg |
1839254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 29820986 - 29820902
Alignment:
| Q |
215 |
agaggcaaaaaatttccaaagatcttgcagaaaaagccactgacactatgacaaaagccggtttggatgattctgacaaacaagg |
299 |
Q |
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| T |
29820986 |
agaggcaaaaaatttccgaagatcttcctcgaaaagcaaccgacaccctgacaaaagccggcttggatgattctgacaaacaagg |
29820902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 29822637 - 29822569
Alignment:
| Q |
29 |
agtctaagcatgcaactgttagtgttgataaaatgcttgctgctttgcaacgtaaggcagcagacaagg |
97 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||| || |||||||||| |||||| ||||||| |
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| T |
29822637 |
agtctaggcatgcaactgttagtgttgatgaaatgcttgcggcgttgcaacgtacggcagcggacaagg |
29822569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 29821533 - 29821494
Alignment:
| Q |
111 |
agaagaagatgaagcactgataaaatcaattttctcgaat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29821533 |
agaagaagatgaagcactgataaaatcaattttctcgaat |
29821494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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