View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7869_high_2 (Length: 390)
Name: NF7869_high_2
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7869_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 13799484 - 13799111
Alignment:
| Q |
1 |
caaaatctggtatgaatattattgcatatgcataaatgaagttttattttggaaagatccggcataaaatatttgatnnnnnnnnnnnnnnnnnttgact |
100 |
Q |
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| T |
13799484 |
caaaatctggtatgaatattattgcatatgcataaatgaagttttattttggaaagatccggcataaaatatttgataaaaaataaataaaaaattgact |
13799385 |
T |
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| Q |
101 |
tataatgatagaactaaatccatcaataaagatcaattagataaatgtgaatgtagtatagtgcataggggagattgctttcatatgcaaggatcaatta |
200 |
Q |
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| T |
13799384 |
tataatgatagaactaaatccatcaataaagattaattagataaatgtgaatgtagtatagtgcatagaggcgattgcttacatatgcaaggatcaatta |
13799285 |
T |
|
| Q |
201 |
gaaaaatccatcaatata-nnnnnnnnnnnatacgtggtcacctcataaaaataatgttaacttcggcactattagacca-actttatcattttccagta |
298 |
Q |
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|| ||||||||||||||| ||| |||| |||||||||||| || ||||||||||||||||||||| ||| |||||||||||||| ||| |
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| T |
13799284 |
gataaatccatcaatatattatttttctttatatgtggccacctcataaaattattgttaacttcggcactattaggccagcctttatcattttcctgta |
13799185 |
T |
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| Q |
299 |
tacagaataagtgaaaatttgaattaacatcttaaaaacgtgatgtcagtgtcttatgtatatagtaaaagtgt |
372 |
Q |
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| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
13799184 |
tgcagaataagtgaaaatttgaattaacatcttaaacacgtgatgtcagtgtattatgtatatagtaaaagtgt |
13799111 |
T |
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