View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7869_high_3 (Length: 347)
Name: NF7869_high_3
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7869_high_3 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 21157991 - 21158311
Alignment:
| Q |
13 |
acatcaaacacttccagttctaacattccttttttcataccaaattcatattaatgtcagactcagttcactaataacagttatgtaattagttctttca |
112 |
Q |
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| T |
21157991 |
acatcaaacacttccagttctaacattccttttttgataccaaattcatattaatgtcagactcagttcactaataacagttatgtaattagttctttca |
21158090 |
T |
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| Q |
113 |
ttgacttgtgcattagttctttcagataatttcaaataaattcatcgaaaaggttcttccttatgctactgaccatatacttttatgccttgtctaattc |
212 |
Q |
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| T |
21158091 |
ttgacttgtgcattagttctttcagataatttcaaataaattcatcgaaaaggttcttccttatgctactgaccatatacttttatgccttgtctaattc |
21158190 |
T |
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| Q |
213 |
ctttcatcgcacggagcagaaaccacatgttatgtcgcattgcatccacaagttaaagggttgagtgattgatatattgtagaaaatttgatatcatgac |
312 |
Q |
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| T |
21158191 |
ctttcatcgcacggagcagaaaccacatgttatgtcgcattgcatccacaagttaaagggttgagtgaatgatatattgtagaaaatttgatatcatgac |
21158290 |
T |
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| Q |
313 |
tcctaagttgtatgaactaat |
333 |
Q |
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| T |
21158291 |
tcctaagttgtatgaactaat |
21158311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 21285011 - 21285194
Alignment:
| Q |
97 |
gtaattagttctttcattgacttgtgcattagttctttcagataatttcaaataaattcatcgaaaaggttcttccttatgctactgaccatatactttt |
196 |
Q |
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| T |
21285011 |
gtaattagttctttgattgacttgtgcagtagttctttctcataatttcaaataaattcatagaaagggttcttccttatgcagctgaccatatacttgt |
21285110 |
T |
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| Q |
197 |
atgccttgtctaattcctttcatcgcacggagcagaaaccacatgttatgtcgcattgcatccacaagttaaagggttgagtga |
280 |
Q |
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| T |
21285111 |
atgcctggtctaattcctttcatcgcacggagaagcaaccacatgctatgacacattgcatccacaagttaaagggttcagtga |
21285194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 21110559 - 21110684
Alignment:
| Q |
137 |
gataatttcaaataaattcatcgaaaaggttcttccttatgctactgaccatatacttttatgccttgtctaattcctttcatcgcacggagcagaaacc |
236 |
Q |
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|||| |||||||||||||||| |||| |||||||||||| ||||| |||||||||||| |||||||||||||||||| ||| ||||||||| |||| |
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| T |
21110559 |
gatactttcaaataaattcatagaaagc---cttccttatgctcctgacaatatacttttattccttgtctaattcctttcgtcgtacggagcagcaacc |
21110655 |
T |
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| Q |
237 |
acatgttatgtcgcattgcatccacaagt |
265 |
Q |
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| T |
21110656 |
acatgctatgtcgcattggatccacaagt |
21110684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 333
Target Start/End: Complemental strand, 17729 - 17585
Alignment:
| Q |
189 |
atacttttatgccttgtctaattcctttcatcgcacggagcagaaaccacatgttatgtcgcattgcatccacaagttaaagggttgagtgattgatata |
288 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |||||||||||||| || | |
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| T |
17729 |
atacttttattccttgtataattcctttcatcgcacggagcagcaaccataagttatgtcgcattgcatccacatgttaatgggttgagtgattggtaca |
17630 |
T |
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| Q |
289 |
ttgtagaaaatttgatatcatgactcctaagttgtatgaactaat |
333 |
Q |
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| T |
17629 |
ttgtacaaaactttatatcatgactcttaagttgtatgaactaat |
17585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 63198 - 63135
Alignment:
| Q |
265 |
ttaaagggttgagtgattgatatattgtagaaaatttgatatcatgactcctaagttgtatgaac |
329 |
Q |
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||||||||||||||||||| || |||||| |||||| |||||||||||||||| ||||||||||| |
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| T |
63198 |
ttaaagggttgagtgattggtacattgtacaaaatt-gatatcatgactcctaggttgtatgaac |
63135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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