View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7869_low_1 (Length: 1121)
Name: NF7869_low_1
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7869_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 464 - 1119
Target Start/End: Complemental strand, 580508 - 579852
Alignment:
| Q |
464 |
tctggctaaatctcacagccaagattaactttataataccttaagcaaatttacgacgtagatgtaggtcgtacagagttcgagctcgcattctcagaca |
563 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
580508 |
tctggctaaatctcacagccaagattaactttataataccttgagcaaatttacgacgtagatgtagctcgtacagagttcgagctcgcattctcagaca |
580409 |
T |
|
| Q |
564 |
ccgttgcagagggaggaacatatatgcgtgctttcttgagaatttcagcaacaacccaatgtttacgcttgctcagaggcctagaagaatccaatcgaac |
663 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580408 |
ccgttgcagagggaggaacatatatgcgtgctttcttgagaatttcagcaacaacccaatgtttacgcttgctcagaggcctagaagaatccaatcgaac |
580309 |
T |
|
| Q |
664 |
ctgaaatgacaagcacaaaagcatatgcttgtttagttatcttacaaaaccaagaacacagcaaatccaaaattgcacaagacacttttgtcaatcacca |
763 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580308 |
ctgaaatgacaagcacaaaagcatatgcttgtttagttatcttacaaaaccaagaacacagcaaatccaaaattgcacaagacacttttgtcaatcacca |
580209 |
T |
|
| Q |
764 |
aaa-cagcagtttgttcaaatttagctatgcaatagtgctgctatagccactagagacaataatttgtgctaaacggcatattgcaaaacaatagttatt |
862 |
Q |
| |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
580208 |
aaaacagcagtttgttcaaatttagctacgcaatagtgctgctatagccactagagacaacaatttgtgctaaacggcatattgcaaaacaatagttatt |
580109 |
T |
|
| Q |
863 |
tattaaaaattcagctacgctgtagcgccactgtttaacaacaatggtaaaagatagataaattattcgcaatactaacccggtcaccgatgttgcaaag |
962 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
580108 |
tattaaaaattcagctacgctgtagcgccgctgtttaacaacaatggtaaaagataggtaaattattcgcaatactaacccggtcaccgatgttgcaaag |
580009 |
T |
|
| Q |
963 |
attgttttcatcatgagccataaacttggaagtgcgcttaatatatcggttgaacattttatggtggaacaatctatcaactgctaccacaaccgatttc |
1062 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
580008 |
attgttttcatcatgcgccataaacttggaagtgcgcttaatatatcggttgaacattttgtggtggaacaatctatcaactgctaccacaaccgatttc |
579909 |
T |
|
| Q |
1063 |
tgcatcttatttgaaaccaccattcctactacttccttcatcttctctgctactcca |
1119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
579908 |
tgcatcttatttgaaaccaccattcctactacttccttcatcttctctgctattcca |
579852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 581035 - 580580
Alignment:
| Q |
18 |
ataaatctctaatcctactaagattcttaatatttaca---------gggacatctccgactgcatttgaaagttaaggcttttacttgtttgtggagaa |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
581035 |
ataaatctctaatcctactaagattcttaatatttacaatatttacagggacatctcctactgcatttgaaagttaaggcttttacttgtttgtggagaa |
580936 |
T |
|
| Q |
109 |
attggaagacaacgtaatacatataacacatttaaatatcttatcaattattttgaaaatcagaaatctgcagacatacaaaacctttgtgatcatccta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
580935 |
attggaagacaacgtaatacatataacacatttaaatatcttatcaattattttgaaaaacagaaatctgcagacatacaaaacctttgtgatcatccta |
580836 |
T |
|
| Q |
209 |
cactataattcattagcacaaatggcaatagagatcacataatataacatcttgacatctaataagaccttatgtcatctgaagttgctgaagactgatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580835 |
cactataattcattagcacaaatggcaatagagatcacataatataacatcttgacatctaataagaccttatgtcatctgaagttgctgaagactgatt |
580736 |
T |
|
| Q |
309 |
ctaacccatcaacagacaagctaaccaaccttggaacatgccacattaaaattcgtcctgccatgaaaattacaattccattatattcagttagaagttg |
408 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
580735 |
ctaacccatcaacagacacgctaaccaaccttggaacatgccacattaaaattcgtcctgccacgaaaattacaattccattatattcagttagaagttg |
580636 |
T |
|
| Q |
409 |
ctacaaaagagcatcatttagcataccgtcaaagtgtcgattatatgcactggact |
464 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
580635 |
ctacaaaagagcatcatatagcataccgtcaaagtgtcgattatatgcacaggact |
580580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 470 - 1119
Target Start/End: Original strand, 4036764 - 4037421
Alignment:
| Q |
470 |
taaatctcacagccaagattaactttataataccttaagcaaatttacgacgtagatgtaggtcgtacagagttcgagctcgcattctcagacaccgttg |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
4036764 |
taaatctcacagccaagattaactttataataccttgagcaaatttatgacgtagatgtaggtcctacagagttcgagctcgcattctcagacactgttg |
4036863 |
T |
|
| Q |
570 |
cagagggaggaacatatatgcgtgctttcttgagaatttcagcaacaacccaatgtttacgcttgctcagaggcctagaagaatccaatcgaacctgaaa |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4036864 |
cagagggaggaacatatatgcgtgctttcttaagaatttcagcaaccacccagtgtttatgcttgctcagaggcctagaagaatccaatcgaacctgaaa |
4036963 |
T |
|
| Q |
670 |
tgacaagcacaaaagcatatgcttgtttagttatcttacaaaaccaagaacaca--gcaaatccaaaattgcacaagacacttttgtcaat------cac |
761 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| | |||||||| ||| |
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| T |
4036964 |
tgataagcacaaaagcatatgcttgtttagttatcttacaaaaccaagaacacacagcaaattcaaaattatacaagacattgttgtcaattacaatcac |
4037063 |
T |
|
| Q |
762 |
caaaa-cagcagtttgttcaaatttagctatgcaatagtgctgctatagccactagagacaataatttgtgctaaacggcatattgcaaaacaatagtta |
860 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||| | |
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|
| T |
4037064 |
caaaaacagcagtttgttcaaatttagctacgcaatagtgctgctatagccactagagacaacatattgtgctaaatggcgcattgcaaaacaatagtaa |
4037163 |
T |
|
| Q |
861 |
tttattaaaaattcagctacgctgtagcgccactgtttaacaacaatggtaaaagatagataaattattcgcaatactaacccggtcaccgatgttgcaa |
960 |
Q |
| |
|
||| || || || | |||||||| |||||| ||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4037164 |
tttgttctaatttaa-ctacgctgaagcgccgctgtttaacaacactggtaaaagacaggtaaattattcgcaatactaactcggtcaccgatgttgcaa |
4037262 |
T |
|
| Q |
961 |
agattgttttcatcatgagccataaacttggaagtgcgcttaatatatcggttgaacattttatggtggaacaatctatcaactgctaccacaaccgatt |
1060 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
4037263 |
agattgttttcatcatgagccataaacttcgaagtgcgcttaatatatcggttgaacattttgtggtggaacaatctatcaactgctacaacaaccgatt |
4037362 |
T |
|
| Q |
1061 |
tctgcatcttatttgaaaccaccattcctactacttccttcatcttctctgctactcca |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
4037363 |
tctgcatcttatttgaaaccaccattcctactacttgcttcatcttctctgctattcca |
4037421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 4036164 - 4036557
Alignment:
| Q |
18 |
ataaatctctaatcctactaagatt-----cttaat----atttacagggacatctccgactgcatttgaaagttaaggcttttacttgtttgtggagaa |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4036164 |
ataaatctctaatcctactaagattagattcttaattattatttacagg-acctctcctactgcatttgaaagttaaggctattacttgtttgtggagaa |
4036262 |
T |
|
| Q |
109 |
attggaagacaacgtaatacatataacacatttaaatatcttatcaattattttgaaaatcagaaatctgcagacatacaaaacctttgtg--atcatcc |
206 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4036263 |
attggaagacaatgtaatacagataccacatttaaatatcttatcaattattttgaaaatcagaaatctgcagacatacaaaacctttttataatcatcc |
4036362 |
T |
|
| Q |
207 |
tacactataattcattagcacaaatggcaatagagatcacataatataacatcttgacatctaataagaccttatgtcatctgaagttgctgaagactga |
306 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
4036363 |
tacactataattcaattgcacaaatggcaatagagatcacataatatgacatcttgacatctaataagaccttatgtcatctgaggttccagaagactga |
4036462 |
T |
|
| Q |
307 |
ttctaacccatcaacagacaagctaaccaaccttggaacatgccacattaaaattcgtcctgccatgaaaattacaattccattatattcagtta |
401 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
4036463 |
ttctaacccatcaacaaacaagctaaccaaccttggaatatgccacattaaaattcgtcctgccacaaaaattgccattccattatattcagtta |
4036557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 409 - 464
Target Start/End: Original strand, 4036626 - 4036681
Alignment:
| Q |
409 |
ctacaaaagagcatcatttagcataccgtcaaagtgtcgattatatgcactggact |
464 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
4036626 |
ctacaaaagagtatcatatagcatactgtcaaagtgtcaattatatgcactagact |
4036681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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