View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7869_low_3 (Length: 498)
Name: NF7869_low_3
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7869_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 23)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 3 - 482
Target Start/End: Complemental strand, 32306868 - 32306389
Alignment:
| Q |
3 |
atggactgctgcttactagtatgtattcatcaaacattatggccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctc |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306868 |
atggactgtagcttactagtatgtattcatcaaacattatggccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactacccta |
32306769 |
T |
|
| Q |
103 |
aaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaat |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32306768 |
aaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaat |
32306669 |
T |
|
| Q |
203 |
tcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctga |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32306668 |
tcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctga |
32306569 |
T |
|
| Q |
303 |
agcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306568 |
agcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtga |
32306469 |
T |
|
| Q |
403 |
gtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatg |
482 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306468 |
gtgtcaaaatatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcactactagagtgatg |
32306389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 44 - 468
Target Start/End: Complemental strand, 32310957 - 32310533
Alignment:
| Q |
44 |
gccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttg |
143 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32310957 |
gccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttg |
32310858 |
T |
|
| Q |
144 |
ctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaagg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32310857 |
ctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcgagg |
32310758 |
T |
|
| Q |
244 |
ttagacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagcca |
343 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310757 |
ttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagcca |
32310658 |
T |
|
| Q |
344 |
tcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgc |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310657 |
tcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgc |
32310558 |
T |
|
| Q |
444 |
ttgcatgtatgacatccctttgtca |
468 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32310557 |
ttgcatgtatgacatccctttgtca |
32310533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 71 - 482
Target Start/End: Original strand, 32786342 - 32786753
Alignment:
| Q |
71 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
170 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32786342 |
agctgtcactttacatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccg |
32786441 |
T |
|
| Q |
171 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
270 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786442 |
actcacttaagagcttacaagatgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32786541 |
T |
|
| Q |
271 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786542 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
32786641 |
T |
|
| Q |
371 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcact |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786642 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcact |
32786741 |
T |
|
| Q |
471 |
actagagtgatg |
482 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32786742 |
actagagtgatg |
32786753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 71 - 468
Target Start/End: Original strand, 32563891 - 32564287
Alignment:
| Q |
71 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
170 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
32563891 |
agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatgaacca |
32563989 |
T |
|
| Q |
171 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32563990 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttcaagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32564089 |
T |
|
| Q |
271 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
370 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564090 |
aaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
32564189 |
T |
|
| Q |
371 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtca |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564190 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatgacatccctttgtca |
32564287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 83 - 466
Target Start/End: Original strand, 28213918 - 28214301
Alignment:
| Q |
83 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
28213918 |
acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga |
28214017 |
T |
|
| Q |
183 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccga |
282 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
28214018 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccga |
28214117 |
T |
|
| Q |
283 |
aaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214118 |
aaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctca |
28214217 |
T |
|
| Q |
383 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt |
466 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28214218 |
acaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt |
28214301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 116 - 468
Target Start/End: Original strand, 32813598 - 32813950
Alignment:
| Q |
116 |
aaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
215 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813598 |
aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
32813697 |
T |
|
| Q |
216 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32813698 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaa |
32813797 |
T |
|
| Q |
316 |
accaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813798 |
accaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatg |
32813897 |
T |
|
| Q |
416 |
ctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtca |
468 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813898 |
ctccagatggtactgcagatgacaatgcttgcatgtatgacatccctttgtca |
32813950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 83 - 466
Target Start/End: Complemental strand, 28222366 - 28221983
Alignment:
| Q |
83 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
182 |
Q |
| |
|
||||||| ||||||||| |||||||||| | |||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
28222366 |
acatggctaaaactaccatcaaatgtgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaaga |
28222267 |
T |
|
| Q |
183 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccga |
282 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28222266 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccga |
28222167 |
T |
|
| Q |
283 |
aaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctca |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222166 |
aaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaagccatcagctgttgatcagcaaacaataaccctcttcctctca |
28222067 |
T |
|
| Q |
383 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28222066 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt |
28221983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 80 - 358
Target Start/End: Original strand, 32792734 - 32793012
Alignment:
| Q |
80 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcactta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792734 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcactta |
32792833 |
T |
|
| Q |
180 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32792834 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatc |
32792933 |
T |
|
| Q |
280 |
cgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792934 |
cgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag |
32793012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 57 - 316
Target Start/End: Original strand, 32799379 - 32799638
Alignment:
| Q |
57 |
ataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatg |
156 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32799379 |
ataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatg |
32799478 |
T |
|
| Q |
157 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799479 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
32799578 |
T |
|
| Q |
257 |
acataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799579 |
acataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa |
32799638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 151 - 464
Target Start/End: Complemental strand, 28177707 - 28177383
Alignment:
| Q |
151 |
agaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagaca |
250 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28177707 |
agaattaaatatatcaaccaactcagttaagaacttataatttgggaacaattcagacgaacctgaccttgatttccagtcaaaacatcaagattagaca |
28177608 |
T |
|
| Q |
251 |
attt------caacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccat |
344 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| || ||| | ||||| |||||| |
|
|
| T |
28177607 |
atttgaactccaacaccacccttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccat |
28177508 |
T |
|
| Q |
345 |
cagctgttgatcagcaaacaata-----accctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgaca |
439 |
Q |
| |
|
||||||||||| ||| |||| || |||||||||||| || |||||| |||| | ||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
28177507 |
cagctgttgattagcgaacagtagccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgaca |
28177408 |
T |
|
| Q |
440 |
atgcttgcatgtatgacatcccttt |
464 |
Q |
| |
|
| ||||||||| ||||||| |||| |
|
|
| T |
28177407 |
acgcttgcatgcctgacatcacttt |
28177383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 157 - 373
Target Start/End: Complemental strand, 28159032 - 28158816
Alignment:
| Q |
157 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
256 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| || ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
28159032 |
aaatatatcaaccaactcagttaagaacttataatttcggaacaattcagacgaacctgacctttatttccagtcaaaacatcaatattagacaatttca |
28158933 |
T |
|
| Q |
257 |
acataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatc |
356 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
28158932 |
acaccacccttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagccatgagctgttgatt |
28158833 |
T |
|
| Q |
357 |
agcaaacaataaccctc |
373 |
Q |
| |
|
||| |||| || ||||| |
|
|
| T |
28158832 |
agcgaacagtagccctc |
28158816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 28171876 - 28171757
Alignment:
| Q |
153 |
aatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaat |
252 |
Q |
| |
|
|||||||||||| ||||||| || || ||| |||| || |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28171876 |
aatgaaatatatcaaccaacgcagttcagaacttataatttgggaacaattcagatgaacctgaccttgatttccagtcaaaacatcaacattagacaat |
28171777 |
T |
|
| Q |
253 |
ttcaacataacccttgcaaa |
272 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
28171776 |
ttcaacaccacccttgcaaa |
28171757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 28161798 - 28161723
Alignment:
| Q |
194 |
gggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgc |
269 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
28161798 |
gggaacaattcagacaaacctgaccttgatttccagtcaaaacatcaatattagacaatttcaacacaatccttgc |
28161723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 32799142 - 32799183
Alignment:
| Q |
3 |
atggactgctgcttactagtatgtattcatcaaacattatgg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799142 |
atggactgctgcttactagtatgtattcatcaaacattatgg |
32799183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 32790242 - 32790283
Alignment:
| Q |
3 |
atggactgctgcttactagtatgtattcatcaaacattatgg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32790242 |
atggactgctgcttactagtatgtattcattaaacattatgg |
32790283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 32812379 - 32812420
Alignment:
| Q |
3 |
atggactgctgcttactagtatgtattcatcaaacattatgg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32812379 |
atggactgctgcttactagtatgtattcattaaacattatgg |
32812420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
| Q |
400 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
464 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28158788 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28158724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
| Q |
400 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
464 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28169357 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28169293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 32813551 - 32813602
Alignment:
| Q |
45 |
ccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaact |
96 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
32813551 |
ccatcaaaatcaataaattctgtaacatttgtcattttacatggccaaaact |
32813602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 28183206 - 28183168
Alignment:
| Q |
426 |
cactgcagatgacaatgcttgcatgtatgacatcccttt |
464 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
28183206 |
cactgcagatgacaacgcttccatgtatgacatcccttt |
28183168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28213589 - 28213630
Alignment:
| Q |
3 |
atggactgctgcttactagtatgtattcatcaaacattatgg |
44 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
28213589 |
atggacttctgcttactagtatgtatttattaaacattatgg |
28213630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 28147881 - 28147825
Alignment:
| Q |
201 |
attcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaa |
257 |
Q |
| |
|
|||||||| || |||||||||| ||| |||||| ||||||| |||||||||||||| |
|
|
| T |
28147881 |
attcagaccaatctgaccttgacttcaagtcaatacatcaaaattagacaatttcaa |
28147825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 32317567 - 32317504
Alignment:
| Q |
400 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
464 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||| |||||| |||||| |||||||| |
|
|
| T |
32317567 |
tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatcccttt |
32317504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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