View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7869_low_4 (Length: 410)
Name: NF7869_low_4
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7869_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 34083201 - 34082814
Alignment:
| Q |
16 |
ctcctttcatggcattgtgaatttagttgggtgatctgtatattagttttataggtttgtctttgaattgatttctatcttctattgctttgttttgtcc |
115 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34083201 |
ctcctttcatggcattgtgaatttagttgggt-agatgtatattagttttataggtttgtctttgaattgatttctatcttctattgctttgttt-gtcc |
34083104 |
T |
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| Q |
116 |
gatgtaagggacatgggttagttcacttgtaaatgttagttgctgagatatcaagctaaacatccgaacttaatgtttctcttttagctaactgagtgag |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34083103 |
gatgtaagggacatgggtaagttcacttgtaaatgttagttgc-gagaaatcaagctaaacatccgaacttaatgtttctcttttagctaaccgagtgag |
34083005 |
T |
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| Q |
216 |
acatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagggtgataggttaaggtttaattaaaataaaagcactt |
315 |
Q |
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| T |
34083004 |
atatcagaggtaagagactagagatgatatcaggttatatgcgagacattgagatctatgaaggatggtaggttaaaatttaattaaaataaaagcagtt |
34082905 |
T |
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| Q |
316 |
tagggtcgatcaaggcaagacattagttagtaaattaaccaatgaaacttaatcccaacacaatttgtatattgtttgtttcttctcactc |
406 |
Q |
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| T |
34082904 |
tagggtcgatcaaggcaagacattagttagtaaattaactgatgaaacttaatcccaacacaatttgtatattgtttgtttcacctcactc |
34082814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 18435724 - 18435663
Alignment:
| Q |
181 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatga |
242 |
Q |
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| T |
18435724 |
gaacttaatgtttcacttttagctaactgagtgaaacatcagattttagagacaagagatga |
18435663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 397
Target Start/End: Original strand, 26744345 - 26744556
Alignment:
| Q |
182 |
aacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagggt |
281 |
Q |
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|||| |||| |||||| ||||||||||||| ||||||||||| | ||| ||||||||| |||||| ||||| || ||||||| |||||||||||||||| |
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| T |
26744345 |
aactaaatgcttctctattagctaactgagcaagacatcaaaggttagatactagagattatctcccattatttgtgagacatcgagatctatgaagggt |
26744444 |
T |
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| Q |
282 |
gataggttaaggtttaattaaaataaaagcactttagggtcgatcaaggcaagacattagttagtaaattaaccaatgaaacttaatcccaacacaattt |
381 |
Q |
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| T |
26744445 |
gataggtgaagatataattgggataataagagtttttagtccattaaagaaagacattagt----aaactaactaatgaagcttaatcctaacacaaatt |
26744540 |
T |
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| Q |
382 |
gtatattgtttgtttc |
397 |
Q |
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||| |||||||||||| |
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| T |
26744541 |
gtaaattgtttgtttc |
26744556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 7480408 - 7480506
Alignment:
| Q |
181 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaagg |
279 |
Q |
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| T |
7480408 |
gaacttaatgcttatcttttagcttcctaggcgagacatcgaaggttggagactagagatgatttccaattatctgcgagacattgagatctatgaagg |
7480506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 31930612 - 31930738
Alignment:
| Q |
181 |
gaacttaatgtttctcttttagctaactgagtgagacatcaaagataagagactagagatgatctccgattatatgcgagacattgagatctatgaaggg |
280 |
Q |
| |
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|||||||||| |||||||| ||||||||| | |||||||| | | |||||||||||| |||||| ||||| | ||||||| ||||||||| | || |
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| T |
31930612 |
gaacttaatgcttctctttcagctaactgggcaagacatcataagttagagactagagacgatctctcattatctatgagacatcgagatctatttaagg |
31930711 |
T |
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| Q |
281 |
tgataggttaaggtttaattaaaataa |
307 |
Q |
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||||| || ||||| ||||| |||||| |
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| T |
31930712 |
tgataagtgaaggtataattgaaataa |
31930738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 26653296 - 26653189
Alignment:
| Q |
228 |
agagactagagatgatctccgattatatgcgagacattgagatctatgaagggtgataggttaaggtttaattaaaataaaagcactttagggtcgatca |
327 |
Q |
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|||||||||||| ||||| | ||||| | ||||| || ||||| |||||||||||||||| ||||| ||||| |||||||| | |||| || ||||| |
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| T |
26653296 |
agagactagagacgatctaccattatttacgagatatcaagatccatgaagggtgataggtgaaggtataattggaataaaaggaatttaaagttgatca |
26653197 |
T |
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| Q |
328 |
aggcaaga |
335 |
Q |
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||| |||| |
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| T |
26653196 |
aggaaaga |
26653189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 23720254 - 23720209
Alignment:
| Q |
186 |
taatgtttctcttttagctaactgagtgagacatcaaagataagag |
231 |
Q |
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||||| || |||||||||||| |||| ||||||||||||||||||| |
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| T |
23720254 |
taatgcttatcttttagctaattgagcgagacatcaaagataagag |
23720209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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