View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7869_low_6 (Length: 387)

Name: NF7869_low_6
Description: NF7869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7869_low_6
NF7869_low_6
[»] chr6 (3 HSPs)
chr6 (12-368)||(1260579-1260934)
chr6 (88-229)||(19739843-19739984)
chr6 (135-189)||(33054280-33054334)
[»] chr8 (1 HSPs)
chr8 (88-229)||(45473460-45473601)
[»] chr5 (3 HSPs)
chr5 (88-229)||(23284245-23284386)
chr5 (39-229)||(9718497-9718698)
chr5 (39-229)||(15928570-15928771)
[»] chr1 (3 HSPs)
chr1 (88-229)||(23183075-23183216)
chr1 (87-229)||(4976462-4976603)
chr1 (39-229)||(1802953-1803154)
[»] chr4 (3 HSPs)
chr4 (88-229)||(10430207-10430348)
chr4 (84-229)||(2244972-2245117)
chr4 (185-229)||(54780721-54780765)
[»] chr2 (1 HSPs)
chr2 (83-233)||(40448819-40448968)
[»] chr7 (1 HSPs)
chr7 (39-229)||(47261459-47261660)
[»] chr3 (2 HSPs)
chr3 (100-229)||(54577176-54577305)
chr3 (303-340)||(9492962-9492999)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 1260934 - 1260579
Alignment:
Q  12 catcattgtaagtaacacaaatataatccaagtagtcatgctcttaacatgctccatgcttgtctcatgctacaccaacatgtgaccgatcactaaaacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1260934 catcattgtaagtaacacaaatataatccaagtagtcatgctcttaacatgctccatgcttgtctcatgctacaccaacatgtgaccgatcactaaaacc 1260835  T
Q  112 ctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctcta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1260834 ctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctcta 1260735  T
Q  212 tcatatttctcaccatttaatagagctaatacacaactttctaaaattaagagataattactccctcctttttaaactacatgccgcagtcacacaactt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1260734 tcatatttctcaccatttaatagagctaatacacaactttctaaaattaagagataattactccctcctttctaaactacatgccgcagtcacacaactt 1260635  T
Q  312 tgatcattaatatctttaactatctatgacnnnnnnntcataaaaatttgatatctt 368  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  1260634 tgatcattaatatctttaactatctatgac-aaaaaatcataaaaatttgatatctt 1260579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 19739843 - 19739984
Alignment:
Q  88 aacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttct 187  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||||||||| ||||||||| |||    
T  19739843 aacatgtgaccaatcactaaaaccctcatttgctaattgacctctatcagtctctcttttaaaaactttacaacaaaaacaaaataatctatcaagctct 19739942  T
Q  188 tttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    ||| ||||||||||||||||||||||| | ||||| ||||||    
T  19739943 tttaaataaacaagccaatctctatcacacttctctccattt 19739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 33054334 - 33054280
Alignment:
Q  135 caatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttt 189  Q
    |||||| | |||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  33054334 caatccattttttaaaaacttaacaacaaaaataaaatatcctatcaaattcttt 33054280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 45473601 - 45473460
Alignment:
Q  88 aacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttct 187  Q
    ||||||||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  45473601 aacatgtgaccaatcactaaaaccctcatttactaattgacctctaccaatccctcttttaaaaactttacaacaaaaacaaaataatctatcaagctct 45473502  T
Q  188 tttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    ||||||||||||||||||||||||||| | ||||| ||||||    
T  45473501 tttgaataaacaagccaatctctatcacacttctctccattt 45473460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 23284245 - 23284386
Alignment:
Q  88 aacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttct 187  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  23284245 aacatgtgaccaatcactaaaaccctcatttgctaattgacctctaccaatccctcttttaaaaactttacaaaaaaaacaaaataatctatcaagctct 23284344  T
Q  188 tttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    ||||||||||||||||||||||||||| | ||||| ||||||    
T  23284345 tttgaataaacaagccaatctctatcacacttctctccattt 23284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 9718698 - 9718497
Alignment:
Q  39 ccaagtagtcatgctcttaacatgctccatgcttgtctcatgcta-----------caccaacatgtgaccgatcactaaaaccctcagttgctaattga 127  Q
    ||||||||||||| |||||||||| |||||||||||||||||||            ||| ||||||||||| |||||||||||||||| ||| |||||||    
T  9718698 ccaagtagtcatgttcttaacatgttccatgcttgtctcatgctctctaagtctttcactaacatgtgaccaatcactaaaaccctcatttgttaattga 9718599  T
Q  128 cttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctctatcatatttctcaccat 227  Q
    |   |||||| || ||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  9718598 ccattaccaacccatcttttataaactttacaacaaaaacaaaatactctatcaagctctttggaataaacaagccaatctctatcacacttctctccat 9718499  T
Q  228 tt 229  Q
    ||    
T  9718498 tt 9718497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 15928771 - 15928570
Alignment:
Q  39 ccaagtagtcatgctcttaacatgctccatgcttgtctcatgcta-----------caccaacatgtgaccgatcactaaaaccctcagttgctaattga 127  Q
    ||||||||||||| |||||||||| |||||||||||||||||||            ||| ||||||||||| |||||||||||||||| ||| |||||||    
T  15928771 ccaagtagtcatgttcttaacatgttccatgcttgtctcatgctctctaagtctttcactaacatgtgaccaatcactaaaaccctcatttgttaattga 15928672  T
Q  128 cttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctctatcatatttctcaccat 227  Q
    |   |||||| || ||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  15928671 ccattaccaacccatcttttataaactttacaacaaaaacaaaatactctatcaagctctttggaataaacaagccaatctctatcacacttctctccat 15928572  T
Q  228 tt 229  Q
    ||    
T  15928571 tt 15928570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 23183216 - 23183075
Alignment:
Q  88 aacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttct 187  Q
    ||||||||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  23183216 aacatgtgaccaatcactaaaaccctcatttactaattgacctctaccaatccctcttttaaaaactttacaacaaaaacaaaataatctatcaagctct 23183117  T
Q  188 tttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    ||||||||||||||||||||||||||| | ||||| ||||||    
T  23183116 tttgaataaacaagccaatctctatcacacttctctccattt 23183075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 4976462 - 4976603
Alignment:
Q  87 caacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttc 186  Q
    |||||||||||| ||||| |||||| | | || ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  4976462 caacatgtgaccaatcaccaaaacc-taatttactaattgacctataccaatccctcttttaaaaactttacaacaaaaacaaaataatctatcaagctc 4976560  T
Q  187 ttttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    |||||||||||||||||||||||||||| | ||||| ||||||    
T  4976561 ttttgaataaacaagccaatctctatcacacttctctccattt 4976603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 1802953 - 1803154
Alignment:
Q  39 ccaagtagtcatgctcttaacatgctccatgcttgtctcatgcta-----------caccaacatgtgaccgatcactaaaaccctcagttgctaattga 127  Q
    ||||||||||||| |||||||||| |||||||||||||||||||            ||| ||||||||||| |||||||||||||||| ||| |||||||    
T  1802953 ccaagtagtcatgttcttaacatgttccatgcttgtctcatgctctctaagtctttcactaacatgtgaccaatcactaaaaccctcatttgttaattga 1803052  T
Q  128 cttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctctatcatatttctcaccat 227  Q
    |   |||||| || ||||||| ||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  1803053 ccattaccaacccatcttttataaactttacaacaaaaaaaaaatactctatcaagctctttggaataaacaagccaatctctatcacacttctctccat 1803152  T
Q  228 tt 229  Q
    ||    
T  1803153 tt 1803154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 10430207 - 10430348
Alignment:
Q  88 aacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttct 187  Q
    ||||||||||| ||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  10430207 aacatgtgaccaatcgctaaaaccctcatttgctaattgacctctaccagtccctcttttaaaaactttacaacaaaaacaaaataatctatcaagctct 10430306  T
Q  188 tttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    ||||||||||||||||||||||||||| | ||||| ||||||    
T  10430307 tttgaataaacaagccaatctctatcacacttctctccattt 10430348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 2245117 - 2244972
Alignment:
Q  84 caccaacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaag 183  Q
    ||||||||||||||| ||||| |||||||||| ||| |||||||| | ||| |||| ||||||||||||||||||||||||||||||||| | ||||||     
T  2245117 caccaacatgtgaccaatcaccaaaaccctcatttgttaattgacctttactaatcactcttttaaaaactttacaacaaaaacaaaatactttatcaaa 2245018  T
Q  184 ttcttttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
     ||||| |||||||||||||||||||||||| | ||||| ||||||    
T  2245017 ctctttcgaataaacaagccaatctctatcacacttctctccattt 2244972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 54780765 - 54780721
Alignment:
Q  185 tcttttgaataaacaagccaatctctatcatatttctcaccattt 229  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||    
T  54780765 tcttttgaataaacaagccaatctctatcacacttctctccattt 54780721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 40448968 - 40448819
Alignment:
Q  83 acaccaacatgtgaccgatcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaa 182  Q
    |||||||||||||||| |||||||||||||||| ||  ||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  40448968 acaccaacatgtgaccaatcactaaaaccctcatttcttaattgacttctaacaatccctctcttaaaaactttacaac-aaaacaaaataatctatcaa 40448870  T
Q  183 gttcttttgaataaacaagccaatctctatcatatttctcaccatttaata 233  Q
    | ||||||| |||||||||||||||||||||| | ||||| | ||||||||    
T  40448869 gctcttttgcataaacaagccaatctctatcacacttctctcaatttaata 40448819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 47261459 - 47261660
Alignment:
Q  39 ccaagtagtcatgctcttaacatgctccatgcttgtctcatgcta-----------caccaacatgtgaccgatcactaaaaccctcagttgctaattga 127  Q
    ||||||||||||| |||||||||| |||||||||||||||||||            ||| ||||||||||| |||||||||||||||| ||| |||||||    
T  47261459 ccaagtagtcatgttcttaacatgttccatgcttgtctcatgctctctaagtctttcactaacatgtgaccaatcactaaaaccctcatttgttaattga 47261558  T
Q  128 cttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaacaagccaatctctatcatatttctcaccat 227  Q
    |   |||||| || ||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| | ||||| ||||    
T  47261559 ccattaccaacccatcttttataaactttacaacaaaaacaaaatactctatcaagctctttggaataaacaagccaatctctatcacacttctctccat 47261658  T
Q  228 tt 229  Q
    ||    
T  47261659 tt 47261660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 54577176 - 54577305
Alignment:
Q  100 atcactaaaaccctcagttgctaattgacttctaccaatccctcttttaaaaactttacaacaaaaacaaaatattctatcaagttcttttgaataaaca 199  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  54577176 atcactaaaaccctcgtttgctacttgacttctaccaatccctcttttgaaaactttacaacaaaaacaaaataatctatcaaactcttttgaataaaca 54577275  T
Q  200 agccaatctctatcatatttctcaccattt 229  Q
    || |||||||||||| | ||||| ||||||    
T  54577276 agtcaatctctatcacacttctctccattt 54577305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 9492962 - 9492999
Alignment:
Q  303 acacaactttgatcattaatatctttaactatctatga 340  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  9492962 acacaactttgatcattaatatctttaattatatatga 9492999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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