View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7870_high_1 (Length: 596)
Name: NF7870_high_1
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 341 - 444
Target Start/End: Complemental strand, 16060253 - 16060150
Alignment:
| Q |
341 |
ctcaaagacttcccccagtggcccttctggaacttgcccaggctgcgcagcctctggttgaggtgcgggctctcctccgggctgttccaagtccctaaag |
440 |
Q |
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| T |
16060253 |
ctcaaagacttcccctagtggcccttctggaacttgcccatgctgcgcagcctctggttgaggtgcgggctctcctccgggctgttccaagtccctaaag |
16060154 |
T |
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| Q |
441 |
atag |
444 |
Q |
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|||| |
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| T |
16060153 |
atag |
16060150 |
T |
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Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 2625298 - 2625175
Alignment:
| Q |
18 |
atcagggggtcagttttgtggatattcttcgcgcaatgcgagaagttcccggaaaagggagatttggtcccctctctatccaactgggcgagtcggtttg |
117 |
Q |
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| T |
2625298 |
atcagggggtcagttttgtggatattcttcgcgcaatgcaagaagttcccggaaaaggcagattcggtccc--ctctatccaactgggtgagtcggtttg |
2625201 |
T |
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| Q |
118 |
taagagtctctggccgatattcccac |
143 |
Q |
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| T |
2625200 |
taagagtctctgtccgatattcccac |
2625175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 31772896 - 31772790
Alignment:
| Q |
180 |
gctggttcggttttcaacccagaaagggtctgggtccagctcggccatccgagatataatataacctgacttttgaggttaatcaaagttagaatatcat |
279 |
Q |
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| T |
31772896 |
gctgattcggttttcaacctagaaagggtcggggtccagctcgcccatctgagatataa-----cctgacttttgaggttaatcaaagttataatttcat |
31772802 |
T |
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| Q |
280 |
ctatggggggct |
291 |
Q |
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| T |
31772801 |
ctatggggggct |
31772790 |
T |
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