View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7870_high_6 (Length: 244)
Name: NF7870_high_6
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 26943346 - 26943158
Alignment:
| Q |
45 |
gttatatcaacaggcctggatgcttctaagatctcttgcagtaatcggagctacacttggattgttattaggaattgttggaacatcagttcctttctta |
144 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943346 |
gttatatcaacaggcccggatgcttctaagatctcttgcagtaatcggagctacacttggattgttattaggaattgttggaacatcagttcctttctta |
26943247 |
T |
|
| Q |
145 |
tttccctacatttttacatctgatcagatggtcatacgggaggtcagttctttctttttataagttcatattagatatgggtgatgtcc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26943246 |
tttccctacatttttacatctgatcagatggtcataagggaggtcagttctttctttttataagttcatattagatatgggtgctgtcc |
26943158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 27002638 - 27002560
Alignment:
| Q |
118 |
attgttggaacatcagttcctttcttatttccctacatttttacatctgatcagatggtcatacgggaggtcagttctt |
196 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| | ||| |||||||||| |
|
|
| T |
27002638 |
attgttggaacatctgttccttggttattcccctacatttttacacctgatcagatggtcatccaggaagtcagttctt |
27002560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 26951017 - 26950906
Alignment:
| Q |
65 |
tgcttctaagatctcttgcagtaatcggagctacacttggattgttattaggaattgttggaacatcagttcctttcttatttccctacatttttacatc |
164 |
Q |
| |
|
|||| ||||| ||||||| | |||| ||||||| |||||||||||| ||||| || ||||||||||| || || ||||| || ||||| |||||||| |
|
|
| T |
26951017 |
tgctactaaggtctcttgtaataattggagctatacttggattgttgttagggatagttggaacatctcttatttggttattcccatacatatttacatc |
26950918 |
T |
|
| Q |
165 |
tgatcagatggt |
176 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26950917 |
tgatcagatggt |
26950906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 26979588 - 26979670
Alignment:
| Q |
121 |
gttggaacatcagttcctttcttatttccctacatttttacatctgatcagatggtcatacgggaggtcagttctttcttttt |
203 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||| |||||| |||||||||||||||| | ||||||||||| ||| ||||| |
|
|
| T |
26979588 |
gttggaacatttgttccttggttattcccctacacgtttacacctgatcagatggtcatccaggaggtcagttttttattttt |
26979670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 26987840 - 26987786
Alignment:
| Q |
142 |
ttatttccctacatttttacatctgatcagatggtcatacgggaggtcagttctt |
196 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| | |||||| ||||||| |
|
|
| T |
26987840 |
ttattcccctacatttttacacctgatcagatggtcatccaggaggttagttctt |
26987786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26943391 - 26943361
Alignment:
| Q |
1 |
tgatactccgttctcgtttgtcaatccttta |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26943391 |
tgatactccgttctcgtttgtcaatccttta |
26943361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University