View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7870_low_2 (Length: 555)
Name: NF7870_low_2
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 421 - 537
Target Start/End: Complemental strand, 6400393 - 6400278
Alignment:
| Q |
421 |
taataacaaattaacaagtgacatgagaatatgattcaactcaggtgctgaatacacggttaagttcaaaagatatgcatttcaaattcacctttcccga |
520 |
Q |
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| T |
6400393 |
taataacaaattaacaagtgacatgagaatacgattcaactcaggtgctgaatacacggttaagttcaaaa-atatgcatttcaaattcacctttcccga |
6400295 |
T |
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| Q |
521 |
ataccttccaccataaa |
537 |
Q |
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| T |
6400294 |
ataccttccaccataaa |
6400278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6408328 - 6408388
Alignment:
| Q |
18 |
ttgatgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttttcat |
78 |
Q |
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| T |
6408328 |
ttgatgattagtaatgaatttgtgtttaattctgtgcattcttctatgttctagttttcat |
6408388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 6407248 - 6407168
Alignment:
| Q |
383 |
ttcattgaagggttcccaaacactttggtatgcctaaataataacaaattaacaagtgacatgagaatatgattcaactcag |
464 |
Q |
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| T |
6407248 |
ttcattgaaggattcatcaacactttggtat-cctacataatgacaaattaacaattgacattagaataagattcaattcag |
6407168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 6407311 - 6407262
Alignment:
| Q |
288 |
atccaactcataatcttggtttgatattgtttagtgtaaatagaagtttt |
337 |
Q |
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| T |
6407311 |
atccaactcataaaattgatttgatattgtttagtgtaaatataagtttt |
6407262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 22221664 - 22221624
Alignment:
| Q |
38 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
78 |
Q |
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| T |
22221664 |
tgtgtttaattttgtgtattgttctatgttttagtcttcat |
22221624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 4966547 - 4966507
Alignment:
| Q |
38 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
78 |
Q |
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| T |
4966547 |
tgtgtttaattttgtgcattcttctatgttttagttttcat |
4966507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9818507 - 9818465
Alignment:
| Q |
18 |
ttgatgattagtaatgaatttgtgtttaattttgtgcattctt |
60 |
Q |
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| T |
9818507 |
ttgatgattagtaatgaatatgtgtttaattttgtgcgttctt |
9818465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 9824225 - 9824171
Alignment:
| Q |
18 |
ttgatgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttt |
74 |
Q |
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| T |
9824225 |
ttgatgattagtaatgaatatgt--ttaattttgtgcattctttgatgttttagttt |
9824171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 43545726 - 43545780
Alignment:
| Q |
22 |
tgattagtaatgaatttgtgttt-aattttgtgcattcttctatgttttagtttt |
75 |
Q |
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| T |
43545726 |
tgattagtaacgaatatgtgttttaattttgtgcgtttttctatgttttagtttt |
43545780 |
T |
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