View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7870_low_4 (Length: 432)
Name: NF7870_low_4
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 70 - 424
Target Start/End: Complemental strand, 50644758 - 50644405
Alignment:
| Q |
70 |
aggaatggatagcgaatgagttcacgagacagttggcaaattttaatggctttggcttttgtgttctccgccatttcgtcgtgttttccgctaggcactg |
169 |
Q |
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| T |
50644758 |
aggaatgcatagcgaatgagttcacgagacagttggcaaattttaatggctttggcttttgtgttctccgccattccgtcgtgttttccgctaggcactg |
50644659 |
T |
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| Q |
170 |
cattttcattggctcaacaaatatacatactatctgcaaagtaagagaagcgaggttaaagtgtacaattaatatgcttatatcatgtcattgaggtgaa |
269 |
Q |
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| T |
50644658 |
aattttcattggctcaacaaatatacatactatctgcaaagtaagagaagcgaggttaaagtgtacaat----atgcttatatcatgtcattgaggtgaa |
50644563 |
T |
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| Q |
270 |
gtatgcatgcaatcatcgatggattaatggttagtagaggatagcttgattcgatgatatatatttgaaaacggctattcacccacctcctaaataattc |
369 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50644562 |
gtatgcatgcaatcatcgatggattaatggctagtagaggatagcttgattcgatgatatatatttgaaaacggctattcacccacctcctaaataattc |
50644463 |
T |
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| Q |
370 |
attatttcatcactagtatttaaaatgtcag---tgccttttttcttcttgttgatgt |
424 |
Q |
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| T |
50644462 |
attatttcatcactagtatttaaaatgtcagtgttgccttttttcttcttgttgatgt |
50644405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 50644858 - 50644788
Alignment:
| Q |
4 |
gagttaaactattaagggtgtcgtgaaggttcgtaaaagcatgctttcgttataaagagcattttcaggaa |
74 |
Q |
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| T |
50644858 |
gagttaaacttttaagggtgtcgtgaaggttcgtgaaagcatgctttcgttataaaaagcatttttaggaa |
50644788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 34467597 - 34467494
Alignment:
| Q |
80 |
agcgaatgagttcacgagacagttggcaaattttaatggctttggcttttgtgttctccgccatttcgtcgtgttttccgctaggcactgcattttcatt |
179 |
Q |
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|||||| ||||||| |||||| |||||| ||||| ||| ||||| || ||||| |||||||| | | ||||||||| |||||||| |||||||||| |
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| T |
34467597 |
agcgaaggagttcatgagacacttggcatgttttagtggttttggattccgtgttttccgccatcctgacatgttttccgttaggcactacattttcatt |
34467498 |
T |
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| Q |
180 |
ggct |
183 |
Q |
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|||| |
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| T |
34467497 |
ggct |
34467494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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