View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7870_low_6 (Length: 319)
Name: NF7870_low_6
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34534301 - 34534068
Alignment:
| Q |
1 |
tcagcttctccaaaaaccggtacagttttaagctctgatcacgttccttcatctgaagctcctgtgactcctggttcaaggcttggatggaagtcttcaa |
100 |
Q |
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| T |
34534301 |
tcagcttctccaaaaaccggtacagttttaagctctgatcacgctccttcatctgaagctcctgtgactcctggttcaaggcttggatggaagtcttcaa |
34534202 |
T |
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| Q |
101 |
gggtttcttatgagagctctgaaaatcggggaggatctaagcctggatcagcagaaaatgaagcttcaaaaccaatttcagaaccaaatagatccttgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34534201 |
gggtttcttatgagagctctgaaaatcggggaggatctaagcctggatcagcagaaaatgaagcttcaaaaccaatttcagaaccaaatagatccttgga |
34534102 |
T |
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| Q |
201 |
tgaggaaattgtgacctcatcttcaagagtacaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34534101 |
tgaggaaattgtgacctcatcttcaagagtacaa |
34534068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 34534039 - 34533952
Alignment:
| Q |
230 |
tacaagacagtgaccctccatctaagcagaaagcagatcacgttcatccaaagttacctgattacgattcctttgatgtccatctcat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
34534039 |
tacaagacagtgaccctccatctaagcagaaagcagatcacgttcatccaaagttacctgattacgattcctttgctgcccatttcat |
34533952 |
T |
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