View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7870_low_7 (Length: 292)
Name: NF7870_low_7
Description: NF7870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7870_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 35188519 - 35188259
Alignment:
| Q |
17 |
acaactaatattattaaagaatgcaatcaactcaaggagagcagacgggacataagagtcctgtgatacaaaatggcagaagccaccaaataagtaaaaa |
116 |
Q |
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| T |
35188519 |
acaactaatattattaaagaatgcaatcaactcaaggagagcagacgagacataagagtcctgcgatacaaaatggcagaagccaccaaataagtaaaaa |
35188420 |
T |
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| Q |
117 |
caagctaaccactcatctaacaaaagcctatgacagtagcatatgataattgctcttctcctatctaattttgatccttaatgcttaaggtgagttaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||| ||||||||| | |
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| T |
35188419 |
caagctaaccactcatctaacaaaagcctatgacagtagcatatgataattgctcttctcctatctgactttgctccttaacgcttaacgtgagttaact |
35188320 |
T |
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| Q |
217 |
tacgttgaaaaataaacattaatttacgttgaaaaatacacatacgtgagttaactgatgt |
277 |
Q |
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| T |
35188319 |
tacgttgaaaaataaacattaatttacgttgaaaaatacacatacgtgagttaactgatgt |
35188259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 8514043 - 8514006
Alignment:
| Q |
235 |
ttaatttacgttgaaaaatacacatacgtgagttaact |
272 |
Q |
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| T |
8514043 |
ttaaattacgttgaaaaatacacctacgtgagttaact |
8514006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 8251868 - 8251827
Alignment:
| Q |
84 |
acaaaatggcagaagccaccaaataagtaaaaacaagctaac |
125 |
Q |
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|||||| | |||||||||||||||||| |||||||||||||| |
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| T |
8251868 |
acaaaacgccagaagccaccaaataagcaaaaacaagctaac |
8251827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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