View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_high_17 (Length: 231)
Name: NF7871_high_17
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11029815 - 11029601
Alignment:
| Q |
1 |
aaaacctgaggggcataacttataagttagaattacaaatactatggttttacaacgggatagcattgcaaaacgagggaggttttacattcgggatcat |
100 |
Q |
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| T |
11029815 |
aaaacctgaggggcataacttataagttagaattacaaatacaatggttttacaacgggatagcattgcaaaacgagggaggttttacattcgggatcat |
11029716 |
T |
|
| Q |
101 |
tcccttcgctatatttagcatttttgaatttataatgagtaatcaaccagcaaatataagtatcaaaccctagaaacattatttaagactaaaaccagcc |
200 |
Q |
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| T |
11029715 |
tcccttcgctatatttagcatttttgaatttataatgagtaatcaaccagcaaatataagtatcaaaccctagaaacattatttaagactaaaaccagca |
11029616 |
T |
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| Q |
201 |
aaataagctaattaa |
215 |
Q |
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||||||||||||||| |
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| T |
11029615 |
aaataagctaattaa |
11029601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 1837467 - 1837528
Alignment:
| Q |
154 |
atataagtatcaaaccctagaaacattatttaagactaaaaccagccaaataagctaattaa |
215 |
Q |
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||||||||||| |||| || ||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
1837467 |
atataagtatcgaaccttacaaacattatttaaaactaaaaccagcaaaataagctaattaa |
1837528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1836856 - 1836896
Alignment:
| Q |
1 |
aaaacctgaggggcataacttataagttagaattacaaata |
41 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| |
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| T |
1836856 |
aaaaactgaggggcataagttataagttagaattacaaata |
1836896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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