View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_high_18 (Length: 229)
Name: NF7871_high_18
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9669445 - 9669667
Alignment:
| Q |
1 |
cagctcctggtccaactccttcaccttcaacttactcttaatagtctcagcaacatacatatcatagcatctcttcaatagctcttgctcatccaacgga |
100 |
Q |
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| T |
9669445 |
cagctcctggtccaactccttcaccttcaacttactcttaatagtctcagcaacatacatatcatagcatctcttcaatagctcttgctcatccaacgga |
9669544 |
T |
|
| Q |
101 |
acatactgagaagctgggagataacaactttcaacctcagctatctcattctccagctttttctccagcaacacaatctgaccacagtggtaagcgataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9669545 |
acatactgagaagctgggagataacaactttcaacctcagctatctcattctccagctttttctccagcaacacaatctgaccacggtggtaagcgataa |
9669644 |
T |
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| Q |
201 |
ctgcttcaatctctgccatccgc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9669645 |
ctgcttcaatctctgccatccgc |
9669667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 9684894 - 9685030
Alignment:
| Q |
46 |
ctcagcaacatacatatcatagcatctcttcaatagctcttgctcatccaacggaacatactgagaagctgggagataacaactttcaacctcagctatc |
145 |
Q |
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|||| |||||||||| | ||||||||| || | || ||||| |||| ||| |||||||||| ||||||||||| |||||| || | |||||| ||||| |
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| T |
9684894 |
ctcatcaacatacatcttatagcatcttttgagtaactcttcttcatacaagggaacatacttagaagctgggacataacatctcttgacctcaactatc |
9684993 |
T |
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| Q |
146 |
tcattctccagctttttctccagcaacacaatctgac |
182 |
Q |
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| T |
9684994 |
tcggtctccagttttctctccagcaacacaatctgac |
9685030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9688895 - 9688971
Alignment:
| Q |
1 |
cagctcctggtccaactccttcaccttcaacttactcttaatagtctcagcaacatacatatcatagcatctcttca |
77 |
Q |
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||||||||| || ||| |||||||||| || |||||||||||||| ||||||||||| | ||| |||||||||| |
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| T |
9688895 |
cagctcctgatctaacaacttcaccttctcctcactcttaatagtctgggcaacatacatgttataacatctcttca |
9688971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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