View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7871_high_5 (Length: 435)
Name: NF7871_high_5
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 220 - 425
Target Start/End: Complemental strand, 2265653 - 2265448
Alignment:
| Q |
220 |
aagaagctttgacgttttaaggttaatagataagaacaaataattctgcaagaactacaattataaagaagccgagggtttctcaaaatcatggtcggtg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2265653 |
aagaagctttgacgttttaaggttaatagataagaacaaataattctgcaagaactacaattataaagaagccgagggtttctcaaaatcatggtcggtg |
2265554 |
T |
|
| Q |
320 |
atccattatgatttcgcaaaagctatagagtatagcttttattaaattatgatgactcaacgtgatttcgacaaatccatcatgctaccaaacatgcaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2265553 |
atccattatgatttcgcaaaagctatagagtatagcttttattaaattatgatgactcaacgtgatttcgacaaatccatcatgctaccaaacatgcaaa |
2265454 |
T |
|
| Q |
420 |
cagtat |
425 |
Q |
| |
|
|||||| |
|
|
| T |
2265453 |
cagtat |
2265448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 2265881 - 2265691
Alignment:
| Q |
19 |
aacacatgccttgtatgaatgtatattgaatgtttgttatttgttaaatgttagctggtggagaggtgagcagcactgagtgggagttcatagagatgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2265881 |
aacacatgccttgtatgaatgtatattgaatgtttgttatttgttaaatgttagctggtggagaagtgagcagcactgagtgggagttcatagagatgag |
2265782 |
T |
|
| Q |
119 |
cgagcaagaggaggatctcattcgcaggatgtacgacctagttggagataggtaatatttattactttaatttctctatattcctttgacg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2265781 |
cgagcaagaggaggatctcattcgcaggatgtacgacctagttggagataggtaatatttattcctttaatttctctatattcctttgacg |
2265691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University