View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7871_low_10 (Length: 390)
Name: NF7871_low_10
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 8721088 - 8721227
Alignment:
| Q |
14 |
aatatggtggttggaggttttaaaaggctgttgaacatggtttatagattttctgaaacaatattagagtagtaccgtaaaacaagaacatggattcaac |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
8721088 |
aatatggtggttggaggtttcaaaaggttgttgaacatggtttctagattttctgaaacaatattagagtaatactgtaaaacaagaacatggattcaac |
8721187 |
T |
|
| Q |
114 |
a-----tggcatgatgtaaagggatgacgacggtttctat |
148 |
Q |
| |
|
| | ||||||| |||||||||||||| |||||||| |
|
|
| T |
8721188 |
ataccgtaccatgatgcaaagggatgacgacagtttctat |
8721227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 8705046 - 8705013
Alignment:
| Q |
185 |
atgtcatgttttcataggatgtttctaaatgcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8705046 |
atgtcatgttttcataggatgtttctaaatgcca |
8705013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 46673959 - 46674098
Alignment:
| Q |
14 |
aatatggtggttggaggttttaaaaggctgttgaacatggtttatagattttctgaaacaatattagagtagtaccgtaaaacaagaacatggattcaac |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
46673959 |
aatatggtggttggaggtttcaaaaggttgttgaacatggtttctagattttctgaaacattattagagtaatactgtaaaacaagaacatggattcaac |
46674058 |
T |
|
| Q |
114 |
a-----tggcatgatgtaaagggatgacgacggtttctat |
148 |
Q |
| |
|
| | ||||||| |||||||||||||| |||||||| |
|
|
| T |
46674059 |
atacagtaccatgatgcaaagggatgacgacagtttctat |
46674098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 46673491 - 46673458
Alignment:
| Q |
185 |
atgtcatgttttcataggatgtttctaaatgcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46673491 |
atgtcatgttttcataggatgtttctaaatgcca |
46673458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 44427880 - 44427779
Alignment:
| Q |
14 |
aatatggtggttggaggttttaaaaggctgttgaacatggtttatagattttctgaaacaatattagagtagtaccgtaaaacaagaacatggattcaac |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
44427880 |
aatatggtggttggaggtttcaaaaggttgttgaacatggtttctagattttatgaaacaatattaaagtaataccgtaaaacaagaacatggattcaac |
44427781 |
T |
|
| Q |
114 |
at |
115 |
Q |
| |
|
|| |
|
|
| T |
44427780 |
at |
44427779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 44428347 - 44428380
Alignment:
| Q |
185 |
atgtcatgttttcataggatgtttctaaatgcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44428347 |
atgtcatgttttcataggatgtttctaaatgcca |
44428380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 28710019 - 28709966
Alignment:
| Q |
296 |
ctaattgtttacaccgattttcatccttctaaatattgttttgtacctataaca |
349 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28710019 |
ctaattgtttacaccgattttcatcattctaaatattgttttgtacctgtaaca |
28709966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University