View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7871_low_11 (Length: 387)

Name: NF7871_low_11
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7871_low_11
NF7871_low_11
[»] chr7 (4 HSPs)
chr7 (59-188)||(6102842-6102979)
chr7 (108-187)||(4257481-4257560)
chr7 (59-108)||(42513135-42513184)
chr7 (2-31)||(4257381-4257410)
[»] chr4 (2 HSPs)
chr4 (59-232)||(24733505-24733693)
chr4 (66-187)||(12637953-12638082)
[»] chr6 (4 HSPs)
chr6 (59-108)||(4834747-4834796)
chr6 (59-108)||(7415667-7415716)
chr6 (59-108)||(7422675-7422724)
chr6 (59-108)||(33242876-33242925)
[»] chr5 (3 HSPs)
chr5 (59-108)||(24108726-24108775)
chr5 (59-108)||(8123556-8123605)
chr5 (1-29)||(24108805-24108833)
[»] chr1 (4 HSPs)
chr1 (121-187)||(16544325-16544391)
chr1 (62-108)||(6392797-6392844)
chr1 (121-187)||(23405618-23405684)
chr1 (59-108)||(18583959-18584008)
[»] chr3 (1 HSPs)
chr3 (59-108)||(36326518-36326567)
[»] chr8 (1 HSPs)
chr8 (62-108)||(14276637-14276684)
[»] chr2 (3 HSPs)
chr2 (1-31)||(31211918-31211948)
chr2 (121-187)||(45327547-45327613)
chr2 (2-31)||(45327420-45327449)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 6102979 - 6102842
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcattataagataactacaatggctacataatagtg 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||        ||||| | ||||||||||||||| |||||||||||||||| |    
T  6102979 ttcattatatttttcattgattctaatcatgaaagatacaatgcttatataggtttggggatgtttattataagataactaaaatggctacataatagcg 6102880  T
Q  151 cttctaactagcaaactaatagaatatgcctaaaagac 188  Q
    ||||| | || | | |||||||||||||||||||||||    
T  6102879 cttcttagtaactacctaatagaatatgcctaaaagac 6102842  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 4257481 - 4257560
Alignment:
Q  108 tggatgctcattataagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 187  Q
    ||||| |||||||||||||||||||||  |||||| ||||| |||||| | || | |||||||||||||||  |||||||    
T  4257481 tggatcctcattataagataactacaacagctacacaatagcgcttcttagtaactaactaatagaatatgtttaaaaga 4257560  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 42513135 - 42513184
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  42513135 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 42513184  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 4257381 - 4257410
Alignment:
Q  2 gagtagggatcacactccagaaattaagag 31  Q
    ||||||||||||||||||||||||||||||    
T  4257381 gagtagggatcacactccagaaattaagag 4257410  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 24733693 - 24733505
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcatta-------taagataactacaatggctacat 143  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||        ||||||||||||       |||||||||||||||||||||||    
T  24733693 ttcattatatttttcattccttctaatcatgaaacatacaatgcttatataggcatgtggatgctcattagtcattataagataactacaatggctacat 24733594  T
Q  144 aatagtgcttctaactagcaaactaatagaatatgcctaaaagacctatttaaaaattaattgagtcattattactttactataataaa 232  Q
    ||||| |||||| | || | ||||||||||||| |||||||| |||  | || ||| || ||||||| |||||||||||||| ||||||    
T  24733593 aatagcgcttcttagtaactaactaatagaataggcctaaaatacccttctagaaactagttgagtcgttattactttactagaataaa 24733505  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 12638082 - 12637953
Alignment:
Q  66 tatttttcattgattctaatcatgaaacatacaatgcttatat--------ggatgctcattataagataactacaatggctacataatagtgcttctaa 157  Q
    ||||||||||||||| | |||||||  |||||||||||| |||        |||| ||||||||||||||||||||| ||||||| ||||| |||||| |    
T  12638082 tatttttcattgattattatcatgaggcatacaatgcttttataagcttgtggatcctcattataagataactacaacggctacacaatagcgcttctta 12637983  T
Q  158 ctagcaaactaatagaatatgcctaaaaga 187  Q
     |  | |||||||||||||||| |||||||    
T  12637982 gtcactaactaatagaatatgcttaaaaga 12637953  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 4834796 - 4834747
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  4834796 ttcattatatttttcattgattctaataatgaggcatacaatgcttatat 4834747  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 7415716 - 7415667
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  7415716 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 7415667  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 7422724 - 7422675
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  7422724 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 7422675  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 33242925 - 33242876
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || |  ||||||||||||||||    
T  33242925 ttcattatatttttcattgattctcataataaggcatacaatgcttatat 33242876  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 24108775 - 24108726
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    ||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  24108775 ttcattatatttttcattggttctaatcataagacatacaatgcttatat 24108726  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 8123605 - 8123556
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  8123605 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 8123556  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24108833 - 24108805
Alignment:
Q  1 cgagtagggatcacactccagaaattaag 29  Q
    |||||||||||||||||||||||||||||    
T  24108833 cgagtagggatcacactccagaaattaag 24108805  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 16544391 - 16544325
Alignment:
Q  121 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 187  Q
    |||||||||||||||||| ||||||||| |||||| | || | ||||| |||| |||||||||||||    
T  16544391 taagataactacaatggccacataatagcgcttcttagtaactaactagtagagtatgcctaaaaga 16544325  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 6392797 - 6392844
Alignment:
Q  62 attatatttttcattgattctaatcatgaaac-atacaatgcttatat 108  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||    
T  6392797 attatatttttcattgattttaatcatgagacaatacaatgcttatat 6392844  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 23405618 - 23405684
Alignment:
Q  121 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 187  Q
    |||||||||||||| ||||||| ||||||  | || | || | ||||||||||||||||||||||||    
T  23405618 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaaga 23405684  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 18583959 - 18584008
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||| ||||||||||||||||||| || || || ||||||||||||||||    
T  18583959 ttcagtatatttttcattgattctcataataaagcatacaatgcttatat 18584008  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 36326567 - 36326518
Alignment:
Q  59 ttcattatatttttcattgattctaatcatgaaacatacaatgcttatat 108  Q
    |||||||||||||||||||||||| || || || ||||||||||||||||    
T  36326567 ttcattatatttttcattgattctcataataaagcatacaatgcttatat 36326518  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 14276637 - 14276684
Alignment:
Q  62 attatatttttcattgattctaatcatgaaaca-tacaatgcttatat 108  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  14276637 attatatttttcattgattttaatcatgaagcattacaatgcttatat 14276684  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31211948 - 31211918
Alignment:
Q  1 cgagtagggatcacactccagaaattaagag 31  Q
    |||||||||||||||||||||||||||||||    
T  31211948 cgagtagggatcacactccagaaattaagag 31211918  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 45327547 - 45327613
Alignment:
Q  121 taagataactacaatggctacataatagtgcttctaactagcaaactaatagaatatgcctaaaaga 187  Q
    |||||||||||||| ||||||| ||||||  | || | || | ||||||||||||||||||||||||    
T  45327547 taagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaaga 45327613  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 45327420 - 45327449
Alignment:
Q  2 gagtagggatcacactccagaaattaagag 31  Q
    ||||||||||||||||||||||||||||||    
T  45327420 gagtagggatcacactccagaaattaagag 45327449  T

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