View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_13 (Length: 370)
Name: NF7871_low_13
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 12574404 - 12574467
Alignment:
| Q |
35 |
atgtatagagatttaaattgttgatattccatctcgaatcttgctagatatgcttaactttgtt |
98 |
Q |
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| T |
12574404 |
atgtatagagatttaaattgttcattttccatctcgaatcttgctagatatgcttaaatttgtt |
12574467 |
T |
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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 500984 - 501044
Alignment:
| Q |
38 |
tatagagatttaaattgttgatattccatctcgaatcttgctagatatgcttaactttgtt |
98 |
Q |
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| T |
500984 |
tatagagatttaaatcgttgattttccatctcgaatattgctagatatgcttaactttgtt |
501044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 500300 - 500237
Alignment:
| Q |
288 |
caaaccctattgttttttgaacaagcaccaaaccctattcttcttcaacattcatcctctaaat |
351 |
Q |
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| T |
500300 |
caaaccctattcttttttaaacaagcaccaaaccctaatcttcttctacattcatcctccaaat |
500237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 23103866 - 23103828
Alignment:
| Q |
300 |
ttttttgaacaagcaccaaaccctattcttcttcaacat |
338 |
Q |
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| T |
23103866 |
ttttttgaacaagcaccaaaccctattcttcttctacat |
23103828 |
T |
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