View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_14 (Length: 369)
Name: NF7871_low_14
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 39232392 - 39232040
Alignment:
| Q |
1 |
gaaccttgtcaaccttattactaaaagctgaattgtgaatagtttggcactgctccaaaaccctcgtattatctacattaataaaataaccnnnnnnnnn |
100 |
Q |
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| T |
39232392 |
gaaccttatcaaccttattactaaaagctgaattgtgaagagtttggcactgctccaaaaccctcgtattatctacattaataaaataacaaaaaaaaaa |
39232293 |
T |
|
| Q |
101 |
catgtcaaatcagcatcaagcaataagctagatttttctcatttctcaacaaatgcaaaaggaaacgaactaaccagaagaacgttgctgaaaagcgttt |
200 |
Q |
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| T |
39232292 |
catgtcaaatcatcatcaagcaataagctagatttttctcatttctcaacaaatgcaaaaggaaacgaactcaccagaagaacgttgctgaaaagcgttt |
39232193 |
T |
|
| Q |
201 |
gcacaaaaggtcgcatccaagcttttataaattgtcactatacattcaacaaaaggcaaatgcctaatatctgccaaccataaattcacaatcaacacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
39232192 |
gcacaaaaggtcgcatccaagcttttataaattgtcactatactttcaacaaaaggcaaatgcctaatatctgccacccataaattcacattcaacacat |
39232093 |
T |
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| Q |
301 |
aaccattgagatcatattcacaatcaacatgtaaccattgagatcataaaaag |
353 |
Q |
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| T |
39232092 |
aaccattgagatcatattcacaatcaacatgtaaccattgagatcataaaaag |
39232040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 39232041 - 39231998
Alignment:
| Q |
309 |
agatcatattcacaatcaacatgtaaccattgagatcataaaaa |
352 |
Q |
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| T |
39232041 |
agatcatattcacaatcaacgtgtaaccattgagatcataaaaa |
39231998 |
T |
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