View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_15 (Length: 306)
Name: NF7871_low_15
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 3576222 - 3576493
Alignment:
| Q |
20 |
aagggaactagtagttattgtaatgtggctcaacaaattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgactt |
119 |
Q |
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| T |
3576222 |
aagggaactagtagttattgtaatgtggctcaacaaattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgactt |
3576321 |
T |
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| Q |
120 |
caatctccaactcaaattgtcagattgacacgtggaaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576322 |
caatctccaactcaaattgtcagattgacacgtggaaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtaca |
3576421 |
T |
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| Q |
220 |
gtttaactcctacaaaaattaaaagggtttatgtacatagtaaacccttataaagcattgttaaatattctt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576422 |
gtttaactcctacaaaaattaaaagggtttatgtacatagtaaacccttataaagcattgttaaatattctt |
3576493 |
T |
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