View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7871_low_16 (Length: 290)

Name: NF7871_low_16
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7871_low_16
NF7871_low_16
[»] chr2 (2 HSPs)
chr2 (13-272)||(43244810-43245069)
chr2 (71-182)||(39866039-39866140)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 43245069 - 43244810
Alignment:
Q  13 aatatagcatgaaccaaattactcaatactgaggcaagaggcttaaattcccatatatagtcttctaagcagcccaagtggatgaagattttggagcaat 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  43245069 aatatagcatgaaccaaattactcaagactgaggcaagaggcttaaattcccatatatagtcttctaagcagccctagtggaagaagattttggagcaat 43244970  T
Q  113 gcttgtgagcctatacaagcctctctgcaccttctgaagcagagattttgtgggtgcacttgacaaagtgaaggcaattgagtccaaataccaatcacct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43244969 gcttgtgagcctatacaagcctctctgcaccttctgaagcagagattttgtgggtgcacttgacaaagtgaaggcaattgagtccaaataccaatcacct 43244870  T
Q  213 cgtcccttaaaacccacaacctggcctccatctattgagaaagtgaatggtgtcccttct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43244869 cgtcccttaaaacccacaacctggcctccatctattgagaaagtgaatggtgtcccttct 43244810  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 39866140 - 39866039
Alignment:
Q  71 agtcttctaagcagcccaagtggatgaagattttggagcaatgcttgtgagcctatacaagcctctctgcaccttctgaagcagagattttgtgggtgca 170  Q
    ||||||||||||||||    ||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||| ||||||||||||    
T  39866140 agtcttctaagcagccttgttggatgaagattttggagcaatgctt----------acgagcctctctgcaccttatgaagcagagactttgtgggtgca 39866051  T
Q  171 cttgacaaagtg 182  Q
    || || ||||||    
T  39866050 ctagataaagtg 39866039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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