View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_18 (Length: 250)
Name: NF7871_low_18
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 38624397 - 38624184
Alignment:
| Q |
18 |
caaaataatcgagtgctggcaacactcattctaataatttctttcttagcactcactcattaagtggaaaatatgtaggttaaaccattttgaaaatgga |
117 |
Q |
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| T |
38624397 |
caaaataatcgagtgctggcaacactcattctaataatttctttcttagcactcactcattaagtggaaaatatgtaggttaaaccattttgaaaatgga |
38624298 |
T |
|
| Q |
118 |
gaaacataaagtcttgcaaatatttcaacttcataaaaagtaaatgttaaaaagaaagtgttagattgaatgttgctagcacaactctgcttgggatatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38624297 |
aaaacataaagtcttgcaaatatttcaacttcataaaaagtaaatgttaaaaagaaagtgttagattgaatgttgctggcacaactctgcttgggatatg |
38624198 |
T |
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| Q |
218 |
gttatagagtattg |
231 |
Q |
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|||||||||||||| |
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| T |
38624197 |
gttatagagtattg |
38624184 |
T |
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