View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7871_low_19 (Length: 241)

Name: NF7871_low_19
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7871_low_19
NF7871_low_19
[»] chr1 (10 HSPs)
chr1 (1-227)||(3300081-3300307)
chr1 (1-227)||(43044347-43044573)
chr1 (1-227)||(43067418-43067644)
chr1 (8-227)||(43083198-43083417)
chr1 (1-227)||(43077295-43077521)
chr1 (1-227)||(45984400-45984626)
chr1 (5-227)||(7891659-7891881)
chr1 (1-221)||(38138573-38138793)
chr1 (26-195)||(50911813-50911982)
chr1 (35-205)||(40035425-40035595)
[»] chr4 (3 HSPs)
chr4 (1-227)||(4230812-4231038)
chr4 (160-205)||(19965284-19965329)
chr4 (8-80)||(19965381-19965453)
[»] chr6 (2 HSPs)
chr6 (5-225)||(7520431-7520651)
chr6 (5-225)||(7529968-7530188)
[»] chr8 (4 HSPs)
chr8 (1-227)||(4619036-4619262)
chr8 (3-227)||(4788167-4788391)
chr8 (145-227)||(4296931-4297013)
chr8 (22-94)||(4296808-4296880)
[»] chr5 (1 HSPs)
chr5 (1-227)||(16348494-16348720)
[»] chr2 (3 HSPs)
chr2 (1-224)||(33860181-33860404)
chr2 (140-195)||(34690326-34690381)
chr2 (140-195)||(34712738-34712793)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3300081 - 3300307
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300081 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 3300180  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300181 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 3300280  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    |||||||||||||||||||||||||||    
T  3300281 agccatttccaatctggccagggtgat 3300307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43044347 - 43044573
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43044347 acggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggc 43044446  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43044447 tccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 43044546  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    |||||||||||||||||||||||||||    
T  43044547 agccatttccaatctggccagggtgat 43044573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43067644 - 43067418
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  43067644 acggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggc 43067545  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43067544 tccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 43067445  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    |||||||||||||||||||||||||||    
T  43067444 agccatttccaatctggccagggtgat 43067418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 43083198 - 43083417
Alignment:
Q  8 agtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttct 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  43083198 agtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttct 43083297  T
Q  108 caatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatt 207  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43083298 caatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatt 43083397  T
Q  208 tccaatctggccagggtgat 227  Q
    ||||||||||||||||||||    
T  43083398 tccaatctggccagggtgat 43083417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43077521 - 43077295
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  43077521 acggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatttgggc 43077422  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    | | |||||||| || | ||||||||||| |||||||| |||||||||||| |||| ||||||  ||||||| |||||||||||| ||||||||| ||||    
T  43077421 ttcgtctcaatcaccataccagaacgcctatcaatcttggtaacaagctcatcaaacttgacaagaatgtggaaggtgtggcagtgaagaacaggtgcat 43077322  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    |||||||| |||||| |||||||||||    
T  43077321 agccattttcaatcttgccagggtgat 43077295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45984626 - 45984400
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| |||||||||||   |||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||  || |||| |||||||||    
T  45984626 acggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaatcatcttaataataccagtatcaccactcatcaaaaatttgggc 45984527  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    ||| ||||||| ||||  ||||||| |||||||| ||| | || |||||||||||| |||||||||||||||||||||||||||||||||||||| |  |    
T  45984526 tccctctcaatttcctcaccagaacacctgtcaaccttggaaataagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggtgtgt 45984427  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    ||||||||| |||||||||||||||||    
T  45984426 agccatttcgaatctggccagggtgat 45984400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 7891881 - 7891659
Alignment:
Q  5 ccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctcct 104  Q
    ||||||| ||||||  |||  |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  7891881 ccaagtgaaggatatgcagtaaaagtctctaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctcct 7891782  T
Q  105 tctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcc 204  Q
    ||||||  ||      || |  |||||||| |||  |||||||||  ||||| ||||||||||||||||||||||||||||| |||| ||| | ||||||    
T  7891781 tctcaaattcaacattagtattcctgtcaaacttgctaacaagcttggcaaacttgacagcaatgtgggaggtgtggcagtcgagaataggtgtatagcc 7891682  T
Q  205 atttccaatctggccagggtgat 227  Q
    ||||| |||||||||||| ||||    
T  7891681 atttctaatctggccaggatgat 7891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38138793 - 38138573
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    ||||||||||||||||||   ||| |||  ||| |||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  38138793 acggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaatcatcttaacaacaccagcatcaccattcttcaagaatttgggc 38138694  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    |||||||| || |||   ||||||  |||||||| ||| |||||||||| |||||| ||||||| || |||||||||||||||||| |||| ||| | ||    
T  38138693 tccttctcgatttccaaaccagaaaacctgtcaaacttggtaacaagcttagcaaacttgacaggaacgtgggaggtgtggcagtccagaataggtgtat 38138594  T
Q  201 agccatttccaatctggccag 221  Q
    ||||||||  |||| ||||||    
T  38138593 agccattttgaatccggccag 38138573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 50911813 - 50911982
Alignment:
Q  26 aaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaac 125  Q
    |||||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||| |||     | ||     
T  50911813 aaagtctctaccaacatgggcttggtgggaatcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttccacaaaataat 50911912  T
Q  126 gcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 195  Q
    ||||  || |||| |||||||||| |||||| ||||||||||||| ||| |||||||| | |||||||||    
T  50911913 gcctaacattcttggtaacaagcttagcaaacttgacagcaatgttggacgtgtggcaatgaagaacagg 50911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 40035595 - 40035425
Alignment:
Q  35 accaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaa 134  Q
    ||||||||||||||||| |||||||| | || ||  ||  ||||||| |||| ||||||||||||||||| ||||| | |      | ||||||||||||    
T  40035595 accaccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctcctgctcaagcacaaaattacaacgcctgtcaa 40035496  T
Q  135 tcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcca 205  Q
     |||  |||||| |  ||| ||  |||||| ||||||||||||||||||||||| || ||| | |||||||    
T  40035495 gcttgttaacaaacctagcgaacctgacaggaatgtgggaggtgtggcagtcaacaataggtgtatagcca 40035425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4230812 - 4231038
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||    
T  4230812 acggccaagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatctccattcttcaggaatttaggc 4230911  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4230912 tccttctcgatctccttaccagaacgcctgtcaatcttagtaacaagctcagcaaacttgactgcaatgtgggaggtgtggcagtcaagaacaggggcat 4231011  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    | |||||||||||||||||||||||||    
T  4231012 aaccatttccaatctggccagggtgat 4231038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 19965329 - 19965284
Alignment:
Q  160 gacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcca 205  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  19965329 gacagcaatgtgggaggtgtggcagtcaagaacaggtgtatagcca 19965284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 19965453 - 19965381
Alignment:
Q  8 agtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcac 80  Q
    ||||||||||| | |||||||| ||| |||||||| ||||||| |||||||||||||| || | |||||||||    
T  19965453 agtggaggatattgagagaaagcctctaccaccataggcttggcgggaatcatcttaacaacagcagcatcac 19965381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 7520651 - 7520431
Alignment:
Q  5 ccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctcct 104  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  7520651 ccaagaggaggatattcagcgaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctcct 7520552  T
Q  105 tctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcc 204  Q
    ||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||| ||||||||||| || || || || ||||| ||    
T  7520551 tctcaatctccttaccagatcgcctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatcc 7520452  T
Q  205 atttccaatctggccagggtg 225  Q
    |||||||||||| ||||||||    
T  7520451 atttccaatctgtccagggtg 7520431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 7530188 - 7529968
Alignment:
Q  5 ccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctcct 104  Q
    ||||| |||||||| ||||  || |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  7530188 ccaagaggaggatattcagcaaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctcct 7530089  T
Q  105 tctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagcc 204  Q
    ||||||||||||| ||||| |||||||||||||| |||||||| |||||||| || ||||||||||| ||||||||||| || || || || ||||| ||    
T  7530088 tctcaatctccttaccagatcgcctgtcaatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatcc 7529989  T
Q  205 atttccaatctggccagggtg 225  Q
    |||||||||||| ||||||||    
T  7529988 atttccaatctgtccagggtg 7529968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4619036 - 4619262
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| |||| |||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  4619036 acggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggc 4619135  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    || ||||||||  |||| ||||||| |||||||||||| |  | ||||| | |||| ||||||||| |||||||||||||||| | ||||||||| | ||    
T  4619136 tcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtat 4619235  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    |||||||||||||||||||||||||||    
T  4619236 agccatttccaatctggccagggtgat 4619262  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 4788391 - 4788167
Alignment:
Q  3 ggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctc 102  Q
    ||||||||||||||||   | |||||| ||| |||||||| ||||||||||||| ||||| ||||| |||| ||||||| ||||||||||||   |||      
T  4788391 ggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatctcaataagaccatcatcaccattcttcaagaatgcaggcct 4788292  T
Q  103 cttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatag 202  Q
    || ||||||  |||  |||||| |  |||||| |||   || ||||||| |||||| ||||||||| |||||||||||||||| ||||| ||| | ||||    
T  4788291 ctcctcaattacctaaccagaatgattgtcaaccttgcaaataagctcatcaaattcgacagcaatttgggaggtgtggcagtgaagaataggcgtatag 4788192  T
Q  203 ccatttccaatctggccagggtgat 227  Q
    || ||| ||||||| ||||||||||    
T  4788191 cctttttcaatctgtccagggtgat 4788167  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 4296931 - 4297013
Alignment:
Q  145 aagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgat 227  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||| | |||||| | | ||||||||| ||||||||    
T  4296931 aagctcagcaaatttgacaggaatgtgggaggtgtggcagtgaagaataggtgtatagccttcttcaatctggctagggtgat 4297013  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 4296808 - 4296880
Alignment:
Q  22 agagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaat 94  Q
    |||||||| ||| |||||||| | || |||||||||||||||||||| || |   ||||| ||||||||||||    
T  4296808 agagaaaggctctaccaccatagactcggtgggaatcatcttaataagacaattgtcaccattcttcaagaat 4296880  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16348494 - 16348720
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| |||| |||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||    
T  16348494 acggccgagtgaaggatattcagaaaaagtctctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgggc 16348593  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    |||||| ||||   ||| ||||||  |||||| | ||| | || ||||| |||||| ||||||||||||| |||||||||||||| ||||||||| | ||    
T  16348594 tccttcacaattatcttgccagaaaacctgtctaccttggcaagaagcttagcaaacttgacagcaatgtaggaggtgtggcagttaagaacaggtgtat 16348693  T
Q  201 agccatttccaatctggccagggtgat 227  Q
    | || ||| |||| |||||||||||||    
T  16348694 aacccttttcaatttggccagggtgat 16348720  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33860181 - 33860404
Alignment:
Q  1 acggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggc 100  Q
    |||||| ||||||||||| | || ||||  ||| |||||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||    
T  33860181 acggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggc 33860280  T
Q  101 tccttctcaatctcctttccagaacgcctgtcaatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcat 200  Q
    ||||||||||| ||||| ||| ||  || ||||| ||| | || ||||||| ||||  ||||||||| ||||||||||||||||||||||| ||| | |     
T  33860281 tccttctcaatttccttaccataaaaccagtcaaccttggcaataagctcaacaaacatgacagcaacgtgggaggtgtggcagtcaagaataggtgtaa 33860380  T
Q  201 agccatttccaatctggccagggt 224  Q
    |||| |||| |||| |||||||||    
T  33860381 agccttttctaatcaggccagggt 33860404  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 34690326 - 34690381
Alignment:
Q  140 gtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 195  Q
    |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |||||    
T  34690326 gtaacaagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacagg 34690381  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 34712738 - 34712793
Alignment:
Q  140 gtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacagg 195  Q
    |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |||||    
T  34712738 gtaacaagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacagg 34712793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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