View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_2 (Length: 519)
Name: NF7871_low_2
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Original strand, 35206128 - 35206621
Alignment:
| Q |
12 |
gaatctcataagctgctttatttttctgttcctctgttccgaaaactagtctccgagctaatgaccatgacgtgaattgtatcgcatgtgctgcagctgg |
111 |
Q |
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| T |
35206128 |
gaatctcataagctgctttgtttttctgttcctctgttccgaaaactagtctccgggctaatgaccatgacgtgaattgtattgcatgtgctgcagctgg |
35206227 |
T |
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| Q |
112 |
actaccgggattaaccgtggctgcaggtttgctgatgtggagcttggatgttgaaactgaaattttgttatcataacagaactgttggataagtgtttta |
211 |
Q |
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| T |
35206228 |
actaccgggattaaccgtggatgcaggtttgctgatgtggagcttggatgttgaaactgaaattttgttatcataacagaactgttggataagtgtttta |
35206327 |
T |
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| Q |
212 |
agtgctgtgttgggaaaaagctcagtggaaatgagtctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgt |
311 |
Q |
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| T |
35206328 |
agtgctgtgttgggaaaaagctcagtggaaatgagtctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgt |
35206427 |
T |
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| Q |
312 |
tgtatgtttggccagtggaaacagttacaggatctgtcattagttccagagaaatcggacaacggtaatcatccggtgttatgtagtttaacatctctgc |
411 |
Q |
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| T |
35206428 |
tgtatgtttggccagtggaaacagttacaggatctgtcattagttccagagaaatcggacaacggtaatcatccggtgttatgtagtttaacatctctgc |
35206527 |
T |
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| Q |
412 |
tgtgcacctggtttcagttttgttatggcttagcagttgaaattgaaaatctagtgtttcgaatattatcacacgacaatagcacaagaaacct |
505 |
Q |
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| T |
35206528 |
tgtgcacctggtttcagttttgttatggcttagcagttgaaattgaaaatctagtgtttcgaatattatcacacgacaatagcacaaaaaacct |
35206621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 43985827 - 43985869
Alignment:
| Q |
12 |
gaatctcataagctgctttatttttctgttcctctgttccgaa |
54 |
Q |
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| T |
43985827 |
gaatctcgtaagctgctttattcttctgttgctctgttccgaa |
43985869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 375
Target Start/End: Original strand, 43986069 - 43986190
Alignment:
| Q |
254 |
cctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgttgtatgtttggccagtggaaacagttacaggatctgtcatta |
353 |
Q |
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| T |
43986069 |
cctgttttagggcatgttttgtttcctgctttaagccatgtctgaattgaagcacgatcgtaggtttgtcctgttgaaactgttactggatcagtcatta |
43986168 |
T |
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| Q |
354 |
gttccagagaaatcggacaacg |
375 |
Q |
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| T |
43986169 |
gttcgagtgaaattggacaacg |
43986190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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