View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_3 (Length: 516)
Name: NF7871_low_3
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 47874279 - 47873794
Alignment:
| Q |
12 |
agcagagaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtct |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874279 |
agcagaaaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtct |
47874180 |
T |
|
| Q |
112 |
aaacaagggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaagg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47874179 |
aaacaagggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaggg |
47874080 |
T |
|
| Q |
212 |
acttcctccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874079 |
acttcctccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgc |
47873980 |
T |
|
| Q |
312 |
tatggacttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaat |
411 |
Q |
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| T |
47873979 |
tatggacttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaat |
47873880 |
T |
|
| Q |
412 |
ttcaatgctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgg |
497 |
Q |
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| T |
47873879 |
ttcaatgctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaatcagacaccacaatcatagctgg |
47873794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 47871273 - 47871728
Alignment:
| Q |
19 |
aagatagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtctaaacaag |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47871273 |
aagataggacaaggtggttttggtggtgtttataaaggctatttgaaagacatagattccaatgttgctataaagagaatatcaagagagtctaaacaag |
47871372 |
T |
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| Q |
119 |
ggataaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaaggacttcct |
218 |
Q |
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| T |
47871373 |
ggataaaggaatatgcaactgaagtgaagatcattagccaacttaggcacaggaatttagtacaactaattggttggtgtcacatgaaaaaagacttcct |
47871472 |
T |
|
| Q |
219 |
ccttatatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggac |
318 |
Q |
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| T |
47871473 |
ccttatatacgagttcatgcaaaatggtagcttagattctcacctatatcgcggaaaaagcatattgacatggcaagtgaggtacaacattgctatggat |
47871572 |
T |
|
| Q |
319 |
ttggcttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatg |
418 |
Q |
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|||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||||| || | |||||||||||||| ||||| ||| | | |||||||| |
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| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttggacgatagtttcaatg |
47871672 |
T |
|
| Q |
419 |
ctaagcttggggatttcggattggcaaggcttgtggatcatgagaaaggatcacaa |
474 |
Q |
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| T |
47871673 |
caaagcttggtgattttgggttggctaggttggtggatcatgagaaagtatcacaa |
47871728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 463
Target Start/End: Original strand, 36931006 - 36931446
Alignment:
| Q |
23 |
tagggcaaggtggttttggtggtgtttataaaggctatttgaaagatatagataccaatgttgctataaagagaatatcaagagagtctaaacaagggat |
122 |
Q |
| |
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||||||||||||||||||||||||| || ||||| ||||||||||| || || || |||||||| | ||||| |||||||||||||||| ||| || || |
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| T |
36931006 |
tagggcaaggtggttttggtggtgtatacaaaggttatttgaaagacttaaattcctatgttgctgtcaagaggatatcaagagagtctagacagggaat |
36931105 |
T |
|
| Q |
123 |
aaaggaatatgcaactgaagtgaagatcattggccagcttagacataggaatttagtacaactaattggttggtgtcacaagaaaaaggacttcctcctt |
222 |
Q |
| |
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| T |
36931106 |
actagaatacgccactgaagtgaaggtcataagccaattgagacacaggaatttagtacaacttcttggttggtgccataggaagaatgattttcttctt |
36931205 |
T |
|
| Q |
223 |
atatatgagttcatgcaaaatggtagcttagattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggacttgg |
322 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||||||| | ||| ||| ||||||||||| ||||||||| || || || ||| ||||| |
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| T |
36931206 |
atatatgagttcatgtcaaatggaagcttagattctcatctatacagtaaaaagagcttattgacatggacaatgaggtataatatagcattgggcttgg |
36931305 |
T |
|
| Q |
323 |
cttcagcacttttgtaccttcatgaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaa |
422 |
Q |
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|||||||| | | ||||| || |||||||||||||| ||||||||||| ||||| | |||||||| ||||| ||||| || |||||||||| |
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| T |
36931306 |
cttcagcattgctttacctacaggaagaatgggaacagtgtgtgcttcacagggacattaaatccagtaacattatgttggattcatgtttcaatgctcg |
36931405 |
T |
|
| Q |
423 |
gcttggggatttcggattggcaaggcttgtggatcatgaga |
463 |
Q |
| |
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|||||| ||||| || || || |||||||| |||||||||| |
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| T |
36931406 |
gcttggtgattttggtttagctaggcttgtagatcatgaga |
36931446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 474
Target Start/End: Original strand, 5820862 - 5821067
Alignment:
| Q |
253 |
gattctcatctataccgcggaaaaagcgtattgacatggcaaatgaggtacaacattgctatggacttggcttcagcacttttgtaccttcatgaagaat |
352 |
Q |
| |
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|||||||| | ||| || ||||||| | ||||||||| ||| ||||| |||||||||| |||||| ||||| |||| | ||||||||||||||||||| |
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| T |
5820862 |
gattctcaccaatatcgtggaaaaatcatattgacattgcatatgagctacaacattgttatggatttggc---agcattgttgtaccttcatgaagaat |
5820958 |
T |
|
| Q |
353 |
gggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaagcttggggatttcggattggcaaggcttgt |
452 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||| ||| | | |||||||| ||| ||||| |||||| ||||||| ||| | || |
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| T |
5820959 |
gggaacaatgtga----cata--------aaatccaataacattatgttggactatattttcaatgttaaacttggtgatttcagattggctagg-tggt |
5821045 |
T |
|
| Q |
453 |
ggatcatgagaaaggatcacaa |
474 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5821046 |
ggatcatgagaaaggatcacaa |
5821067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 467
Target Start/End: Original strand, 36934477 - 36934598
Alignment:
| Q |
346 |
gaagaatgggaacaatgtgtgcttcatagggatgtcaaatccagcaacatcatgttagacaacaatttcaatgctaagcttggggatttcggattggcaa |
445 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | ||||| |||||||| ||||| ||| | | |||||| ||||||| |||||||| || | || | |
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| T |
36934477 |
gaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttggactccgacttcaatactaagctaggggattttggtctagcta |
36934576 |
T |
|
| Q |
446 |
ggcttgtggatcatgagaaagg |
467 |
Q |
| |
|
|| | |||||||||||||||| |
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| T |
36934577 |
ggttgatggatcatgagaaagg |
36934598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 36934148 - 36934199
Alignment:
| Q |
17 |
agaagatagggcaaggtggttttggtggtgtttataaaggctatttgaaaga |
68 |
Q |
| |
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||||| |||| |||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
36934148 |
agaagctaggccaaggtggttttggcggtgtttataagggctattttaaaga |
36934199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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