View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_4 (Length: 466)
Name: NF7871_low_4
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 216 - 449
Target Start/End: Complemental strand, 22155743 - 22155510
Alignment:
| Q |
216 |
acgttgattggagaaggaagagattgagggtgatgatccttgccttatgagaaggttgccggagaaatcatcggattctgagagtcggtggtttgaaggg |
315 |
Q |
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| T |
22155743 |
acgttgattggagaaggaagagattgagggtgatgatccttgtcttatgagaaggttgccggagaaatcatcggattctgagagtcggtggtttgaaggg |
22155644 |
T |
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| Q |
316 |
atgattctacggttgtttcttgttgtgatggtggcgctggtgcttgtacttctttggagggtaaggttttgttgatgtttcatgctttgttagttaggaa |
415 |
Q |
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| T |
22155643 |
atgattctacgattgtttcttgttgtgatggtggcgcttgtgcttgtgcttctttggagggtaaggttttgttgttgtttcatgctttgttagttaggaa |
22155544 |
T |
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| Q |
416 |
cacggaatgaaatgaaactgtagactatacttgt |
449 |
Q |
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| T |
22155543 |
cacggaatgaaatgaaactgtagactatacttgt |
22155510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 22155945 - 22155776
Alignment:
| Q |
14 |
atatatgaccacggcggttcccgaagagtgttccggtgactttgcggccgagtgaaggggagattgaagtggaggagagggtggaaggaatggtgagcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22155945 |
atatatgaccacggcggttcccgaagagtgttccggtgactttgcggccgagtgaaggggagattgaagtggaggagagggtggaaggaatggtgagcca |
22155846 |
T |
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| Q |
114 |
gttgcatgttggaaatatggtttgaaaagtgaagatgttgaggaaagaacgtataagtgaagatagcttc |
183 |
Q |
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| T |
22155845 |
gttgcatgttggaaatatggtttgaaaagtgaagatgttgaggaaagaacgtataagtgaagatagcttc |
22155776 |
T |
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