View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_6 (Length: 437)
Name: NF7871_low_6
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 112 - 420
Target Start/End: Complemental strand, 12767007 - 12766699
Alignment:
| Q |
112 |
actcttgaaacttttagaagtaaatacaccacctatatgagatcgcataacctttatctaccggtcgctttctttctcaacaatagctttaaacttctta |
211 |
Q |
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| T |
12767007 |
actcttgaaacttttaaaagtacatacaccacctatatgagatcgcataacctttatctaccagtcgctttctttctcaacattaactttaaacttctta |
12766908 |
T |
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| Q |
212 |
aaggtgttaaaacttccaattttcgcttcaagaaacagaaacatgttttccttaaataatcaccgatgaaaaggaggaaatagttatttttacctagtga |
311 |
Q |
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| T |
12766907 |
aaggtgttaaaacttccaattttcgcttcaagaagcagaaacatgttttccttaaataatcaccgatgaaaaggaggaaatagttatttttacctagtga |
12766808 |
T |
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| Q |
312 |
gcttggcttgatttggctaatagatgtcaacatgtataagcttgagacatcaccttgaatttatttccaagtaagcatcattcacacggttgatctagat |
411 |
Q |
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| T |
12766807 |
gcttggcttgatttgactaatagatgtcaacatgtataagcttgagacatcaccttgaatttatttccaagtaagcatcattcacacggttgatctagat |
12766708 |
T |
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| Q |
412 |
ggttgattt |
420 |
Q |
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| T |
12766707 |
ggttgattt |
12766699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 324
Target Start/End: Original strand, 15673688 - 15673834
Alignment:
| Q |
179 |
ctttctttctcaacaatagctttaaacttcttaaaggtgttaaa-acttccaattttcgcttcaagaaacagaaacatgttttccttaaataatcaccga |
277 |
Q |
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| T |
15673688 |
ctttctttctccacaaaagctttaaacttcttgaaggtggtaaagacttctgatttctgcttcaagaaatagacccatgtttttcttgaaaaatcatcaa |
15673787 |
T |
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| Q |
278 |
tgaaaaggaggaaatagttatttttacctagtgagcttggcttgatt |
324 |
Q |
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| T |
15673788 |
tgaaaaggaggaaataattgtttttacctagtgagcatggcttgatt |
15673834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 25021530 - 25021567
Alignment:
| Q |
179 |
ctttctttctcaacaatagctttaaacttcttaaaggt |
216 |
Q |
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| T |
25021530 |
ctttctttctccacaataactttaaacttcttaaaggt |
25021567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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