View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7871_low_9 (Length: 411)
Name: NF7871_low_9
Description: NF7871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7871_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 8172592 - 8172209
Alignment:
| Q |
17 |
ctaactacacacttttggtgtataaataccaaaatatcttggccatattaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccggc |
116 |
Q |
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| T |
8172592 |
ctaaccacacacttttggtgtataaataccaaaatatcttagccatattaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccggc |
8172493 |
T |
|
| Q |
117 |
cattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaattcaagggaacaagc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8172492 |
cattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaaatcaagggaacaagc |
8172393 |
T |
|
| Q |
217 |
tttgaatttcatnnnnnnngattgtatttacccattccaacaatcaatatgtcttgatgatcactccattggaattgtttttgtacttccaatttcttat |
316 |
Q |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttcttat |
8172293 |
T |
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| Q |
317 |
gcaaagtttaaagcagatttgggttttgctattgggttcaattattggggccaaggtatagccacaaaagcacttaagattctt |
400 |
Q |
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| T |
8172292 |
gcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaaggtatagccacaaaagcacttaagattctt |
8172209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 400
Target Start/End: Complemental strand, 8169953 - 8169578
Alignment:
| Q |
26 |
cacttttggtgtataaataccaaaatatcttggccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccggccattcaaa |
124 |
Q |
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| T |
8169953 |
cacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccggccattcaaa |
8169854 |
T |
|
| Q |
125 |
gaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaattcaagggaacaagctttgaatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||| |
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| T |
8169853 |
gaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaacaagcttcgaatt |
8169754 |
T |
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| Q |
225 |
tcatnnnnnnngattgtatttacccattccaacaatcaatatgtcttgatgatcactccattggaattgtttttgtacttccaatttcttatgcaaagtt |
324 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| | || |||||||||| |
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| T |
8169753 |
tcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcctgatgcaaagtt |
8169654 |
T |
|
| Q |
325 |
taaagcagatttgggttttgctattgggttcaattattggggccaaggtatagccacaaaagcacttaagattctt |
400 |
Q |
| |
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|||||||||||| |||| |||||||||||| || ||||||||||||||| ||||||| |||||| | ||||||||| |
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| T |
8169653 |
taaagcagatttaggttatgctattgggtttaactattggggccaaggtgtagccaccaaagcagtgaagattctt |
8169578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 8177323 - 8177269
Alignment:
| Q |
242 |
atttacccattccaacaatcaatatgtcttgatgatcactccattggaattgttt |
296 |
Q |
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||||||||| ||| |||||||||||||||||||| |||||||||||||| |||| |
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| T |
8177323 |
atttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggttt |
8177269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 8177237 - 8177160
Alignment:
| Q |
325 |
taaagcagatttgggttttgctattgggttcaattattggggccaaggtatagccacaaaagcacttaagattcttct |
402 |
Q |
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|||||||||| |||||| ||||||||| ||||| |||||||| ||||| || ||||| || ||| | ||||||||||| |
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| T |
8177237 |
taaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttct |
8177160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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