View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7872_high_11 (Length: 230)

Name: NF7872_high_11
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7872_high_11
NF7872_high_11
[»] chr8 (31 HSPs)
chr8 (106-230)||(10284549-10284673)
chr8 (128-227)||(44507027-44507126)
chr8 (110-227)||(504043-504160)
chr8 (110-227)||(12831108-12831225)
chr8 (101-225)||(8841345-8841469)
chr8 (110-230)||(34012218-34012338)
chr8 (110-227)||(14547983-14548100)
chr8 (110-227)||(23122519-23122636)
chr8 (106-227)||(37038540-37038661)
chr8 (107-227)||(5957891-5958011)
chr8 (109-227)||(40423864-40423982)
chr8 (110-227)||(15197394-15197511)
chr8 (105-225)||(43414498-43414618)
chr8 (128-227)||(9122246-9122345)
chr8 (105-227)||(15048098-15048221)
chr8 (106-204)||(4854781-4854879)
chr8 (103-227)||(42354503-42354627)
chr8 (143-227)||(1179895-1179979)
chr8 (104-227)||(15258845-15258968)
chr8 (106-216)||(40467772-40467882)
chr8 (109-212)||(16056322-16056425)
chr8 (110-212)||(24307715-24307817)
chr8 (110-212)||(30479396-30479498)
chr8 (106-192)||(32707921-32708007)
chr8 (128-192)||(42710234-42710298)
chr8 (148-227)||(10621047-10621126)
chr8 (110-205)||(34307299-34307394)
chr8 (105-143)||(20074869-20074907)
chr8 (106-176)||(32032836-32032906)
chr8 (137-227)||(42221576-42221666)
chr8 (144-212)||(16383453-16383521)
[»] scaffold0110 (1 HSPs)
scaffold0110 (104-230)||(8779-8905)
[»] chr2 (38 HSPs)
chr2 (119-225)||(33436031-33436137)
chr2 (106-227)||(20700876-20700997)
chr2 (110-227)||(10249304-10249421)
chr2 (110-227)||(13438404-13438521)
chr2 (110-227)||(32505570-32505687)
chr2 (137-227)||(30915524-30915614)
chr2 (110-227)||(17473081-17473198)
chr2 (110-227)||(19930742-19930859)
chr2 (110-227)||(28863516-28863633)
chr2 (110-227)||(40701539-40701656)
chr2 (106-230)||(36168894-36169018)
chr2 (128-227)||(9058541-9058640)
chr2 (110-227)||(7465657-7465774)
chr2 (137-227)||(4060746-4060836)
chr2 (110-227)||(28381577-28381694)
chr2 (107-203)||(44152012-44152108)
chr2 (103-194)||(41758681-41758772)
chr2 (105-227)||(40613819-40613941)
chr2 (105-227)||(42257254-42257376)
chr2 (128-227)||(38882751-38882853)
chr2 (103-212)||(38732430-38732539)
chr2 (104-215)||(3440052-3440163)
chr2 (105-212)||(13365429-13365536)
chr2 (160-227)||(26891476-26891543)
chr2 (105-227)||(2533184-2533306)
chr2 (103-212)||(2997402-2997511)
chr2 (105-202)||(17823874-17823971)
chr2 (106-227)||(38273061-38273181)
chr2 (106-212)||(3034901-3035007)
chr2 (145-215)||(17819961-17820031)
chr2 (128-170)||(27864809-27864851)
chr2 (106-212)||(43490197-43490303)
chr2 (119-194)||(2329352-2329431)
chr2 (106-227)||(3738004-3738125)
chr2 (137-212)||(45097684-45097759)
chr2 (110-170)||(5574422-5574482)
chr2 (179-227)||(5574479-5574527)
chr2 (103-143)||(33436346-33436386)
[»] chr3 (35 HSPs)
chr3 (103-227)||(30801648-30801772)
chr3 (105-225)||(8076456-8076576)
chr3 (137-227)||(52629361-52629451)
chr3 (103-227)||(20764830-20764954)
chr3 (34-105)||(29555212-29555283)
chr3 (110-227)||(17470466-17470583)
chr3 (110-227)||(33644261-33644378)
chr3 (110-227)||(53982072-53982189)
chr3 (110-227)||(54868817-54868934)
chr3 (103-227)||(35536687-35536811)
chr3 (140-227)||(31456750-31456837)
chr3 (105-230)||(33118767-33118893)
chr3 (103-230)||(41189679-41189806)
chr3 (104-227)||(51419276-51419399)
chr3 (106-204)||(35965700-35965798)
chr3 (110-227)||(49607475-49607592)
chr3 (103-227)||(26754756-26754880)
chr3 (104-212)||(45058469-45058577)
chr3 (103-227)||(26141445-26141571)
chr3 (103-205)||(47531948-47532050)
chr3 (106-227)||(11347840-11347961)
chr3 (128-227)||(9563060-9563159)
chr3 (106-213)||(14623757-14623864)
chr3 (104-230)||(42823169-42823295)
chr3 (103-203)||(1758374-1758471)
chr3 (138-230)||(39670069-39670161)
chr3 (162-218)||(48375680-48375736)
chr3 (137-212)||(36331278-36331353)
chr3 (110-192)||(36707350-36707432)
chr3 (106-227)||(8956823-8956944)
chr3 (110-170)||(11095289-11095349)
chr3 (106-170)||(35093703-35093767)
chr3 (110-170)||(48587023-48587083)
chr3 (137-202)||(21746137-21746202)
chr3 (103-192)||(43746435-43746524)
[»] chr1 (32 HSPs)
chr1 (110-227)||(9474798-9474915)
chr1 (119-227)||(50630519-50630627)
chr1 (110-227)||(27564657-27564774)
chr1 (106-227)||(32813308-32813429)
chr1 (110-227)||(41758866-41758983)
chr1 (106-227)||(51898601-51898722)
chr1 (103-227)||(45044475-45044599)
chr1 (128-227)||(38632261-38632360)
chr1 (110-227)||(48716204-48716321)
chr1 (128-227)||(43193-43292)
chr1 (128-227)||(2581976-2582075)
chr1 (137-227)||(3000380-3000470)
chr1 (137-227)||(38595215-38595305)
chr1 (110-225)||(47452242-47452357)
chr1 (139-225)||(13414824-13414910)
chr1 (104-212)||(5958916-5959024)
chr1 (103-227)||(11152293-11152417)
chr1 (155-227)||(44548343-44548415)
chr1 (110-227)||(37649259-37649376)
chr1 (108-205)||(49811447-49811544)
chr1 (128-227)||(8346327-8346427)
chr1 (106-203)||(44454064-44454165)
chr1 (104-205)||(47748525-47748626)
chr1 (106-212)||(50590918-50591024)
chr1 (106-212)||(44332289-44332395)
chr1 (106-218)||(6260940-6261052)
chr1 (110-227)||(26274493-26274607)
chr1 (104-170)||(26440842-26440908)
chr1 (106-192)||(37926356-37926442)
chr1 (106-192)||(41608411-41608497)
chr1 (128-213)||(7740808-7740893)
chr1 (108-216)||(34339968-34340075)
[»] chr5 (27 HSPs)
chr5 (104-216)||(2177436-2177548)
chr5 (110-230)||(33149560-33149680)
chr5 (105-227)||(31009049-31009171)
chr5 (110-227)||(2740335-2740452)
chr5 (119-227)||(13811713-13811821)
chr5 (108-227)||(35943812-35943931)
chr5 (110-227)||(18520806-18520923)
chr5 (110-227)||(35785260-35785377)
chr5 (110-227)||(40145468-40145585)
chr5 (119-227)||(36732873-36732981)
chr5 (106-227)||(15409528-15409649)
chr5 (107-227)||(6679759-6679879)
chr5 (110-227)||(14831875-14831992)
chr5 (106-227)||(21370065-21370186)
chr5 (103-218)||(6259916-6260031)
chr5 (105-216)||(20073433-20073544)
chr5 (104-227)||(26720577-26720700)
chr5 (104-227)||(26990326-26990449)
chr5 (104-212)||(3921181-3921289)
chr5 (108-192)||(9603909-9603993)
chr5 (140-220)||(36875564-36875644)
chr5 (105-212)||(2252085-2252192)
chr5 (153-227)||(28177836-28177910)
chr5 (107-203)||(33825243-33825339)
chr5 (105-192)||(39688814-39688901)
chr5 (161-227)||(42414275-42414341)
chr5 (178-227)||(31132405-31132454)
[»] chr7 (39 HSPs)
chr7 (137-227)||(38837278-38837368)
chr7 (110-223)||(4999436-4999549)
chr7 (110-227)||(8080305-8080422)
chr7 (110-227)||(11044239-11044356)
chr7 (110-227)||(19329903-19330020)
chr7 (105-230)||(21234459-21234584)
chr7 (132-225)||(35137596-35137689)
chr7 (106-227)||(46033719-46033840)
chr7 (129-225)||(32951434-32951530)
chr7 (137-227)||(38267101-38267191)
chr7 (137-227)||(40957768-40957858)
chr7 (106-227)||(41423743-41423864)
chr7 (119-227)||(19436118-19436226)
chr7 (144-227)||(3784056-3784139)
chr7 (103-205)||(35522959-35523061)
chr7 (107-227)||(16374743-16374863)
chr7 (105-205)||(31735960-31736060)
chr7 (137-227)||(3694428-3694518)
chr7 (103-227)||(8238274-8238398)
chr7 (128-227)||(7389450-7389548)
chr7 (106-212)||(26296720-26296826)
chr7 (104-200)||(27744225-27744321)
chr7 (155-227)||(36208234-36208306)
chr7 (106-213)||(35468773-35468880)
chr7 (106-212)||(22343437-22343543)
chr7 (106-212)||(38044273-38044379)
chr7 (107-218)||(2318160-2318273)
chr7 (105-170)||(46374741-46374806)
chr7 (110-170)||(36362132-36362192)
chr7 (108-212)||(41915817-41915921)
chr7 (103-192)||(32564341-32564430)
chr7 (110-170)||(36361847-36361907)
chr7 (110-227)||(3434623-3434730)
chr7 (103-192)||(40846028-40846117)
chr7 (108-212)||(7727982-7728086)
chr7 (128-216)||(18207251-18207339)
chr7 (107-199)||(32045926-32046018)
chr7 (179-227)||(36361904-36361952)
chr7 (108-192)||(39255844-39255928)
[»] chr4 (34 HSPs)
chr4 (103-225)||(29239949-29240071)
chr4 (137-227)||(42044316-42044406)
chr4 (110-227)||(6034105-6034222)
chr4 (110-227)||(41236408-41236525)
chr4 (106-227)||(41823943-41824064)
chr4 (110-227)||(48182971-48183088)
chr4 (110-230)||(24995029-24995149)
chr4 (104-227)||(31910253-31910376)
chr4 (105-227)||(50052345-50052467)
chr4 (137-227)||(480396-480486)
chr4 (148-227)||(29234205-29234284)
chr4 (137-227)||(11511411-11511501)
chr4 (107-225)||(48647645-48647763)
chr4 (105-227)||(50526088-50526210)
chr4 (128-225)||(54473473-54473570)
chr4 (108-202)||(40574865-40574959)
chr4 (103-212)||(19670631-19670740)
chr4 (103-212)||(47986284-47986392)
chr4 (106-205)||(50813810-50813909)
chr4 (109-192)||(56300086-56300169)
chr4 (106-192)||(55475287-55475373)
chr4 (103-212)||(17983658-17983767)
chr4 (100-205)||(18924407-18924512)
chr4 (162-227)||(53352540-53352605)
chr4 (104-227)||(3481715-3481828)
chr4 (128-227)||(23608296-23608395)
chr4 (104-227)||(28480184-28480307)
chr4 (104-227)||(28481059-28481182)
chr4 (104-227)||(28481934-28482057)
chr4 (105-176)||(29547876-29547947)
chr4 (108-227)||(29977946-29978065)
chr4 (109-192)||(47104640-47104723)
chr4 (105-192)||(44536663-44536750)
chr4 (103-192)||(29589655-29589744)
[»] chr6 (20 HSPs)
chr6 (110-227)||(11427679-11427796)
chr6 (110-227)||(17598615-17598732)
chr6 (106-227)||(31976309-31976430)
chr6 (110-227)||(32869739-32869856)
chr6 (128-227)||(22880598-22880697)
chr6 (137-227)||(23128076-23128166)
chr6 (110-230)||(15832635-15832755)
chr6 (145-224)||(6209422-6209501)
chr6 (110-227)||(29857888-29858005)
chr6 (103-213)||(31952945-31953055)
chr6 (106-212)||(4231624-4231730)
chr6 (139-227)||(31109351-31109439)
chr6 (105-212)||(30341277-30341384)
chr6 (106-212)||(15989960-15990066)
chr6 (128-218)||(28536428-28536518)
chr6 (103-212)||(15507939-15508048)
chr6 (106-227)||(31110679-31110800)
chr6 (121-192)||(946472-946543)
chr6 (119-218)||(30870084-30870183)
chr6 (106-151)||(22421997-22422042)
[»] scaffold1268 (1 HSPs)
scaffold1268 (107-227)||(848-968)
[»] scaffold1267 (1 HSPs)
scaffold1267 (107-227)||(848-968)
[»] scaffold0321 (1 HSPs)
scaffold0321 (137-227)||(10058-10148)
[»] scaffold0237 (1 HSPs)
scaffold0237 (110-227)||(4090-4207)
[»] scaffold0018 (1 HSPs)
scaffold0018 (107-192)||(152594-152679)
[»] scaffold0316 (1 HSPs)
scaffold0316 (179-227)||(17115-17163)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 10284549 - 10284673
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| |||||||| |||||||||||| | ||||||||||    
T  10284549 ggaaaatgttacatagacaccttttattcttatacaaccttgtacaccccatgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcg 10284648  T
Q  206 aggtccacgtgactacgtgtcaaat 230  Q
     ||||||||||||||||||||||||    
T  10284649 gggtccacgtgactacgtgtcaaat 10284673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 44507027 - 44507126
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||| || |||||||||||||||||||||    
T  44507027 tttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtacggggtccacgtgactacgtgtca 44507126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 504043 - 504160
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||  | |||||||||| |||    
T  504043 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggt 504142  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  504143 ccacgtgactacgtgtca 504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 12831225 - 12831108
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  12831225 aatgatacatagacaccatttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 12831126  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  12831125 ccacgtgactacgtgtca 12831108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 8841345 - 8841469
Alignment:
Q  101 tcaaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgctt 200  Q
    |||| |||||||||||| |||||||  |||||||| |||||| |||||||| |||||||| |||||| || ||||| ||||||||||||||| | |||||    
T  8841345 tcaatggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaagaggagaggaaagagaaagtgtgctt 8841444  T
Q  201 gtgcgaggtccacgtgactacgtgt 225  Q
    ||||| |||||||||||||||||||    
T  8841445 gtgcggggtccacgtgactacgtgt 8841469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 34012218 - 34012338
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  ||||||||  |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  34012218 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 34012317  T
Q  210 ccacgtgactacgtgtcaaat 230  Q
    |||||||||||||||||||||    
T  34012318 ccacgtgactacgtgtcaaat 34012338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 14548100 - 14547983
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  14548100 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 14548001  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  14548000 ccacgtgactacgtgtca 14547983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 23122519 - 23122636
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||| | ||||| ||||||||| | ||||| |||| |||    
T  23122519 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggt 23122618  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  23122619 ccacgtgactacgtgtca 23122636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 37038661 - 37038540
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||| | ||||||||||    
T  37038661 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcg 37038562  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     | |||||||||||||||||||    
T  37038561 ggatccacgtgactacgtgtca 37038540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 5958011 - 5957891
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| || ||||  |||||||| ||||||||||||||| | |||||| ||||||||| ||||| ||||||||||||||| | || |||||||     
T  5958011 gaaaatgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcgg 5957912  T
Q  207 ggtccacgtgactacgtgtca 227  Q
    | |||||||||||||||||||    
T  5957911 gatccacgtgactacgtgtca 5957891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 40423864 - 40423982
Alignment:
Q  109 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgagg 208  Q
    ||||| ||| ||||||| ||||||||  ||||||||||||||| | |||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| ||    
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 40423963  T
Q  209 tccacgtgactacgtgtca 227  Q
    ||||| |||||||||||||    
T  40423964 tccacatgactacgtgtca 40423982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 15197511 - 15197394
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| ||||||||  ||||||||||||||| | |||||||| |||||||  |||| ||||| ||||||||| | |||||||||| |||    
T  15197511 aatgatacatagacactttttattcccatacacccttgtacacctcatgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 15197412  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  15197411 ccacgtgactacgtgtca 15197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 43414498 - 43414618
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| |||||||  ||||||   ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||||    
T  43414498 aggaaaatgttacatagacaccctttattgccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 43414597  T
Q  205 gaggtccacgtgactacgtgt 225  Q
    | | |||| ||||| ||||||    
T  43414598 gggatccatgtgaccacgtgt 43414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9122345 - 9122246
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | ||||||||||||| |||||    
T  9122345 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtca 9122246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 15048098 - 15048221
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgaga-ggaaagagaaaatatgcttgtg 203  Q
    ||||||||||||  |||||||  |||||||  ||||||||||||||||||||| |||||||||||| ||||| ||||   ||||||||| | ||||||||    
T  15048098 aggaaaatgttatatagacaccctttattccgatacacccttgtacatcccatacattaggaagagagaagaggagataaaaagagaaagtgtgcttgtg 15048197  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    || |||||| ||| ||||||||||    
T  15048198 cggggtccatgtggctacgtgtca 15048221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 4854781 - 4854879
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    |||||||||||| |||||||  |||||||| ||| ||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||| | |||||||||    
T  4854781 ggaaaatgttacatagacactctttattctcatatacccttgtacatcccatacattagtaagagagaagaggagagaaaagagaaagtgtgcttgtgc 4854879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 42354503 - 42354627
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  |||||||| |||||||||| |||| |||||||| ||||||||| |||||  ||| |||||||||| | ||||| |    
T  42354503 aaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttat 42354602  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    | ||| ||||| |||  ||||||||    
T  42354603 gtgagatccacatgaacacgtgtca 42354627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 1179895 - 1179979
Alignment:
Q  143 ccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | ||||||||||   ||||| |||||||||||||    
T  1179895 ccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtca 1179979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 15258845 - 15258968
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  ||||||   ||||||  |||||||||| ||    ||||||||| ||||| ||||||||||||||||| ||||||||    
T  15258845 aaggaaaatgttacatagacaccctttatttccatacacttttgtacatcctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgtg 15258944  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    |  |||||||||||| || |||||    
T  15258945 cagggtccacgtgaccacatgtca 15258968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 40467882 - 40467772
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| |||||| |  ||| |   ||||||| |||||  | ||||||||| ||||||||||||||||||||| | ||||||||||    
T  40467882 ggaaaatgttacatagacaccttttatccccataaatttttgtacaccccatagactaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcg 40467783  T
Q  206 aggtccacgtg 216  Q
    | |||||||||    
T  40467782 aagtccacgtg 40467772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 16056322 - 16056425
Alignment:
Q  109 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgagg 208  Q
    ||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||    
T  16056322 aaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 16056421  T
Q  209 tcca 212  Q
    ||||    
T  16056422 tcca 16056425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 24307715 - 24307817
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| |||    
T  24307715 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 24307814  T
Q  210 cca 212  Q
    |||    
T  24307815 cca 24307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 30479396 - 30479498
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||||||    
T  30479396 aatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgaggt 30479495  T
Q  210 cca 212  Q
    |||    
T  30479496 cca 30479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 32707921 - 32708007
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| ||||||||||    
T  32707921 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaa 32708007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 42710234 - 42710298
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| |||||||||    
T  42710234 tttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaa 42710298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 10621047 - 10621126
Alignment:
Q  148 tacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||  ||||||||||| ||||| ||||| ||||||||| | |||||||||| | || | ||| ||||||||||    
T  10621047 tacatcccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtca 10621126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 34307394 - 34307299
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  34307394 aatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 34307299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 20074869 - 20074907
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacc 143  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  20074869 aggaaaatgttacatagacacattttattctcatacacc 20074907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 32032906 - 32032836
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaaga 176  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||    
T  32032906 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaaga 32032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 42221666 - 42221576
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| || ||  ||| ||||||| |||||||||| |||||||||| | |||||||  | ||||||  ||| |||||||||    
T  42221666 atacacccttgtacaccctatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgtatggggtccatatgattacgtgtca 42221576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 16383521 - 16383453
Alignment:
Q  144 cttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtcca 212  Q
    |||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||    
T  16383521 cttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtcca 16383453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 8779 - 8905
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||| | ||||||    
T  8779 aaggaaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaagatgggaggaaagagaaaatgtacttgtg 8878  T
Q  204 cgaggtccacgtgactacgtgtcaaat 230  Q
     | |||||||||||||| |||||||||    
T  8879 tggggtccacgtgactatgtgtcaaat 8905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 33436031 - 33436137
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    ||||||| ||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||    
T  33436031 tagacaccttttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgac 33436130  T
Q  219 tacgtgt 225  Q
    |||||||    
T  33436131 tacgtgt 33436137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 20700997 - 20700876
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||  ||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||| ||||    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcg 20700898  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||||||||||||||||||    
T  20700897 gggtccacgtgactacgtgtca 20700876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 10249304 - 10249421
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||||||||||  |||| ||||| ||||||||| | |||||||||| |||    
T  10249304 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 10249403  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  10249404 ccacgtgactacgtgtca 10249421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 13438521 - 13438404
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  13438521 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 13438422  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  13438421 ccacgtgactacgtgtca 13438404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 32505570 - 32505687
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||| ||| ||||| | |||||||||| |||    
T  32505570 aatgatacatagacactctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggt 32505669  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  32505670 ccacgtgactacgtgtca 32505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 30915614 - 30915524
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  30915614 atacacccttgtacaccccatgtattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtca 30915524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 17473198 - 17473081
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  17473198 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 17473099  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  17473098 ccacgtgactacgtgtca 17473081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 19930742 - 19930859
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| ||||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  19930742 aatgatacatagacaccttttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 19930841  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||| |||||||||||||    
T  19930842 ccacatgactacgtgtca 19930859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 28863633 - 28863516
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||||| |||    
T  28863633 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 28863534  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  28863533 ccacgtgactacgtgtca 28863516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 40701656 - 40701539
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||| | || ||||||| |||    
T  40701656 aatgatacatagacaccttttatttccatacacccttgtacacccgatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 40701557  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||| |||||||||||    
T  40701556 ccacgtaactacgtgtca 40701539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 36169018 - 36168894
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  |||||||| |||||| |||||||| ||||| |||||||||||| ||| | ||||| ||||||||| ||||||||||||    
T  36169018 ggaaaatgttacataaacaccctttattctcatacactcttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcg 36168919  T
Q  206 aggtccacgtgactacgtgtcaaat 230  Q
     |||||| ||| | |||||||||||    
T  36168918 gggtccatgtggccacgtgtcaaat 36168894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9058640 - 9058541
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||| |||||||||||||    
T  9058640 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtca 9058541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 7465657 - 7465774
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||| | |||    
T  7465657 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggt 7465756  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  7465757 ccacgtgactacgtgtca 7465774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 4060836 - 4060746
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||| | ||||| |||| | ||||||| |||||||||||    
T  4060836 atacacccttgtacaccccatgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgcgggatccacgtaactacgtgtca 4060746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 28381577 - 28381694
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||||||  ||    
T  28381577 aatgatacatagacaccctttattcccatacatccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggagt 28381676  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||| ||||||||||||||    
T  28381677 ccatgtgactacgtgtca 28381694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 44152108 - 44152012
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    ||||||||||| || |||| ||||||||  ||||||||||||| ||| |||||||||||||||| ||||| |||| |||||||||| | ||||||||    
T  44152108 gaaaatgttacataaacaccttttattcgcatacacccttgtatatctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 44152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 41758772 - 41758681
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaat 194  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||| |||||  ||||||||||| ||||| ||||  |||||||||||    
T  41758772 aaagaaaaatgttacatagacacattttattctcatacatccttgtacaccccatatattaggaagagagaagaggagataaaagagaaaat 41758681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 40613819 - 40613941
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||| ||||| ||||| |||||  ||| | ||||| ||||||||| | |||||||||    
T  40613819 aggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgc 40613918  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    | |||||| ||| | ||||||||    
T  40613919 ggggtccatgtggccacgtgtca 40613941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 42257376 - 42257254
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    |||||||| |||| |||||||  ||||||  ||||||| |||||||| ||||| |||||||||||  ||||| ||||| ||||||||| | |||||||||    
T  42257376 aggaaaatattacatagacaccctttatttctatacactcttgtacaccccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgc 42257277  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    | |||||| ||| | ||||||||    
T  42257276 ggggtccatgtggccacgtgtca 42257254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 38882751 - 38882853
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc---gaggtccacgtgactacgtg 224  Q
    |||||||  ||||||||||||||| ||||||||||||||||||  ||||| |||| ||||||||| |  ||||||||   | ||||||||||||||||||    
T  38882751 tttattcccatacacccttgtacaccccatgcattaggaagagataagataagagaaaagagaaagtgcgcttgtgcgggggggtccacgtgactacgtg 38882850  T
Q  225 tca 227  Q
    |||    
T  38882851 tca 38882853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 38732539 - 38732430
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||||| ||||| |   ||||| ||||||||||| |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  38732539 aaaggaaaatgttacatagacaccttttaattgcatacatccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 38732440  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  38732439 gcggggtcca 38732430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 3440163 - 3440052
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  ||||||   ||||||| ||||||| || ||    ||| ||||| ||||| ||||||||||||||||| ||||||||    
T  3440163 aaggaaaatgttacatagacaccctttatttccatacacctttgtacaccctatattctagaaagagagaagaggagaggaaagagaaaatgtgcttgtg 3440064  T
Q  204 cgaggtccacgt 215  Q
    || |||||||||    
T  3440063 cggggtccacgt 3440052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 13365536 - 13365429
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| ||||||| ||||| |   || |||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  13365536 aggaaaatgttacatagacaccttttaattgcattcacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 13365437  T
Q  205 gaggtcca 212  Q
    | ||||||    
T  13365436 ggggtcca 13365429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 26891476 - 26891543
Alignment:
Q  160 attaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||| |||||  |||||||||||||||| ||||||| ||||||||||||||| || |||||    
T  26891476 attaggaagagagaagagaagaggaaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtca 26891543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 2533306 - 2533184
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||  || ||||  |||||||  ||||||||||||||| ||||| |||| ||||||| ||||| ||||  ||||| ||| | |||||||||    
T  2533306 aggaaaatgttatatatacaccctttattcccatacacccttgtacaccccatacattgggaagagagaagaggagataaaagaaaaagtgtgcttgtgc 2533207  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    | |||| | ||| ||||||||||    
T  2533206 ggggtctatgtggctacgtgtca 2533184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 2997402 - 2997511
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||| ||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  2997402 aaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 2997501  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  2997502 gcggggtcca 2997511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 17823971 - 17823874
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||| ||||||   ||||||   ||||||||||||||| |||||  ||| ||||||| |||||||||| |||||||||| | |||||||    
T  17823971 aggaaaatgttacatagacatcctttatttacatacacccttgtacaccccatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 17823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 38273061 - 38273181
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    ||||||| |||| || ||||  |||||||| ||||| | ||||||| ||||| |||||||||||| ||| | ||||| ||||||||| | |||| |||||    
T  38273061 ggaaaatattacataaacaccatttattctcatacatc-ttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgctagtgcg 38273159  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| ||| ||||||||||    
T  38273160 gggtccatgtggctacgtgtca 38273181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 3034901 - 3035007
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||| | ||||| | |||| ||||||||||| |||||  ||| |||||||||| ||| ||||||||    
T  3034901 ggaaaatgttacatagacaccttttaattgcatacaccttggtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcg 3035000  T
Q  206 aggtcca 212  Q
     ||||||    
T  3035001 gggtcca 3035007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 17819961 - 17820031
Alignment:
Q  145 ttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgt 215  Q
    ||||||| | |||||||||||||||| ||||| |||| |||||||||||| || ||||| | |||||||||    
T  17819961 ttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgt 17820031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 27864851 - 27864809
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  27864851 tttattctcatacacccttgtacatcccatgtattaggaagag 27864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 43490303 - 43490197
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| || ||| ||||||||||| |||||  ||| |||||| ||| | | ||||||||    
T  43490303 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagataaagtgtacttgtgcg 43490204  T
Q  206 aggtcca 212  Q
     ||||||    
T  43490203 gggtcca 43490197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 2329431 - 2329352
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcat-ta---ggaagagggaagatgagaggaaagagaaaat 194  Q
    ||||||| |||||||||||| ||||||||||||||||||  || ||   ||||||| ||||| |||||||||||||||||    
T  2329431 tagacactttttattcttattcacccttgtacatcccatatatctatcgggaagagagaagaggagaggaaagagaaaat 2329352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 3738125 - 3738004
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  | |||| | ||||||| ||||||| || ||    ||||||||  ||||| ||||||||| ||||||| ||||||||||    
T  3738125 ggaaaatgttacatagacaccctatattttcatacacctttgtacaccctatattctaggaagaaagaagaggagaggaaaaagaaaatgtgcttgtgcg 3738026  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     ||||||| |||| || |||||    
T  3738025 gggtccacatgaccacatgtca 3738004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 45097684 - 45097759
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtcca 212  Q
    |||||| ||||||||||| ||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||    
T  45097684 atacactcttgtacatccgatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtcca 45097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 5574422 - 5574482
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||| ||| |||||||  |||||||  |||||||||||||||  |||||||||||||||||    
T  5574422 aatgatacatagacaccctttattcccatacacccttgtacacgccatgcattaggaagag 5574482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5574479 - 5574527
Alignment:
Q  179 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||| ||||||||| | |||||||||| | |||||||||||||||||||    
T  5574479 agagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 5574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 33436386 - 33436346
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacc 143  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  33436386 aaaggaaaatgttacatagacaccttttattctcatacacc 33436346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 30801648 - 30801772
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||    
T  30801648 aaaggaaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgt 30801747  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    | | ||||||  ||||||| |||||    
T  30801748 gtggggtccatatgactacatgtca 30801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 8076576 - 8076456
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| |||||||  |||||||| ||||||  ||||||| |||||||| ||||||||| ||||| ||||||||||||||| | |||||||||    
T  8076576 aggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgc 8076477  T
Q  205 gaggtccacgtgactacgtgt 225  Q
    | |||||||||||||||||||    
T  8076476 ggggtccacgtgactacgtgt 8076456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 52629451 - 52629361
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  52629451 atacacccttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtca 52629361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 20764830 - 20764954
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  |||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| | |||||||    
T  20764830 aaaggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgt 20764929  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
     || |||||| ||| | ||||||||    
T  20764930 acggggtccatgtggccacgtgtca 20764954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 29555283 - 29555212
Alignment:
Q  34 aatacaatagaacagtatcgtgttgtccaaataccaagagaacaaacccaataaatgagactatccatcaaa 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29555283 aatacaatagaaccgtatcgtgttgtccaaataccaagagaacaaacccaataaatgaaactatccatcaaa 29555212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 17470583 - 17470466
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| |||||   |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| | |||    
T  17470583 aatgatacatagacaccatttattctcatacatatttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgtggggt 17470484  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  17470483 ccacgtgactacgtgtca 17470466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 33644378 - 33644261
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  |||||||||| |||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  33644378 aatgatacatagacaccctttattcccatacacccttatacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 33644279  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  33644278 ccacgtgactacgtgtca 33644261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 53982189 - 53982072
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  53982189 aatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 53982090  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  53982089 ccacgtgactacgtgtca 53982072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 54868817 - 54868934
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||| | || ||||||| |||    
T  54868817 aatgatacatagacaccttttatttccatacacccttgtacaccctatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 54868916  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||| |||||||||||    
T  54868917 ccacgtaactacgtgtca 54868934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 35536811 - 35536687
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  |||||||| |||||||||| |||| |||||||| ||||||||| |||||  ||| ||||||| || | |||||||    
T  35536811 aaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgt 35536712  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    |  |||||||| |||| ||||||||    
T  35536711 gtaaggtccacatgaccacgtgtca 35536687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 31456837 - 31456750
Alignment:
Q  140 cacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||| ||||||||||||||||||  |||| ||||| ||||||||| | |||||||||| ||||||| |||||||||||||    
T  31456837 cacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtca 31456750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 33118767 - 33118893
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaa-gatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||||||||||  ||||||   ||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||| | || || ||    
T  33118767 aggaaaatgttacgtagacaccctttatttccatacacccttgtacaccccatgcactagggagagagaaggaggagaggaaagagaaagtgtgtttctg 33118866  T
Q  204 cgaggtccacgtgactacgtgtcaaat 230  Q
     | | ||||||||||||||||||||||    
T  33118867 agggatccacgtgactacgtgtcaaat 33118893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 41189679 - 41189806
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  ||||||   |||||| ||||||||  |||| |||||||||||  ||||| ||||| ||||||||| | |||||||    
T  41189679 aaaggaaaatgttacatagacaccctttatttccatacactcttgtacactccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgt 41189778  T
Q  203 gcgaggtccacgtgactacgtgtcaaat 230  Q
    ||| |||||| ||| | |||||||||||    
T  41189779 gcggggtccatgtggccacgtgtcaaat 41189806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 51419276 - 51419399
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| || |||| |||||||   ||||||||||||||| ||||| |||||||||||| ||| | ||||| ||||||||| | ||||||||    
T  51419276 aaggaaaatgttacataaacaccttttatttccatacacccttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgtg 51419375  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    || |||| | ||| | ||||||||    
T  51419376 cggggtctatgtggccacgtgtca 51419399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 35965700 - 35965798
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||| | |||| |||| ||| ||  |||| ||||||||||||||| | |||||||||    
T  35965700 ggaaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaattaagaaaagaaaagaggagaggaaagagaaagtgtgcttgtgc 35965798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 49607592 - 49607475
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  |||||||||||||||   ||||||||||||||||  |||| ||||| ||||||||| | |||||||| | | |    
T  49607592 aatgatacatagacaccctttattcccatacacccttgtacacgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggat 49607493  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  49607492 ccacgtgactacgtgtca 49607475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 26754880 - 26754756
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  ||||||   ||||||| ||||||| || ||    ||||||||| ||||| ||||||||||||||||| |||||||    
T  26754880 aaaggaaaatgttacatagacactctttatttccatacacctttgtacaccctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgt 26754781  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    ||| |||||| ||||| || |||||    
T  26754780 gcggggtccatgtgaccacatgtca 26754756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 45058469 - 45058577
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||| ||||| |   ||||||| ||||||| |||||| ||||||||||| |||||  ||| |||||||||| ||| ||||||    
T  45058469 aaggaaaatgttacatagacaccttttaattgcatacaccattgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtg 45058568  T
Q  204 cgaggtcca 212  Q
    || ||||||    
T  45058569 cggggtcca 45058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 26141445 - 26141571
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag--ggaagatgagaggaaagagaaaatatgctt 200  Q
    ||||||||||||||| |||||||  ||||||   |||||| |||||||| ||||| ||||||||||||   ||||| ||||| ||||||||| | |||||    
T  26141445 aaaggaaaatgttacatagacaccctttatttccatacactcttgtacaccccatacattaggaagagaaagaagaggagagaaaagagaaagtgtgctt 26141544  T
Q  201 gtgcgaggtccacgtgactacgtgtca 227  Q
    ||| | |||||| ||||| ||||||||    
T  26141545 gtgtggggtccatgtgaccacgtgtca 26141571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 47532050 - 47531948
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| || ||||  |||||||  |||||| ||||||||| |||| |||||||||||| ||| | ||||| ||||||||| | |||||||    
T  47532050 aaaggaaaatgttacataaacaccctttattcccatacacacttgtacattccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgt 47531951  T
Q  203 gcg 205  Q
    |||    
T  47531950 gcg 47531948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 11347840 - 11347961
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||| ||| |||||||  |||||||  |||||||||| |||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||| |||     
T  11347840 ggaaaatggtacatagacaccctttattcccatacacccttatacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgca 11347939  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| ||| | ||||||||    
T  11347940 gggtccatgtggccacgtgtca 11347961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9563159 - 9563060
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  ||||||| ||||||| | |||||||||||||||| ||||| ||||| | ||||||| | || ||||||  | |||||||||||||||||||    
T  9563159 tttattcccatacacctttgtacaactcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgtgactacgtgtca 9563060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 14623757 - 14623864
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||| ||||| |||| |||| | |||||| ||| ||||| |||||  ||| |||||||||| | |||||||| |    
T  14623757 ggaaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtg 14623856  T
Q  206 aggtccac 213  Q
    ||||||||    
T  14623857 aggtccac 14623864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 42823295 - 42823169
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  | | |||||||||| ||| ||| ||    
T  42823295 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaataagaaagagaaagtatacttatg 42823196  T
Q  204 cgaggtccacgtgactacgtgtcaaat 230  Q
    || ||||||  |||| || ||||||||    
T  42823195 cggggtccatatgaccacatgtcaaat 42823169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 1758374 - 1758471
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    |||| |||||||||| || ||||  |||||||  ||||||| ||||||| |||||||||||||||||| ||||| |||| |||||||||||| || ||||    
T  1758374 aaagaaaaatgttacataaacactgtttattc--atacacctttgtaca-cccatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgt 1758470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 39670161 - 39670069
Alignment:
Q  138 tacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaat 230  Q
    |||||||||||||||| ||| ||||| |||||| ||||| ||||| |||||| || | ||| ||| |||||||||| |||  |||||||||||    
T  39670161 tacacccttgtacatctcatacattaagaagagagaagaggagagaaaagaggaagtgtgcgtgtacgaggtccacatgatcacgtgtcaaat 39670069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 48375680 - 48375736
Alignment:
Q  162 taggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||| |||||| |||||    
T  48375680 taggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgac 48375736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 36331278 - 36331353
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtcca 212  Q
    ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||    
T  36331278 atacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtcca 36331353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 36707350 - 36707432
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||| ||| ||||||| ||||||||  |||||  |||||||| | |||||||||||||||| ||||| ||||| |||||||||    
T  36707350 aatgatacatagacaccttttattcccatacattcttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaa 36707432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 8956944 - 8956823
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||   |||||||| |||||||||| |||| ||  |||| ||||||||| |||||  ||| ||||||| || | ||||||||      
T  8956944 ggaaaatgttacatagacagcatttattctcatacacccttctacaccctgtgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgta 8956845  T
Q  206 aggtccacgtgactacgtgtca 227  Q
    |||||||| |||  ||||||||    
T  8956844 aggtccacatgaacacgtgtca 8956823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 11095289 - 11095349
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| || |||||||||||||||    
T  11095289 aatgatacatagacaccctttattctcatacacccttgtacacccgatgcattaggaagag 11095349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 35093767 - 35093703
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||||||||||| ||||||   |||||||| ||||||| ||||||||| |||||| |||||||||    
T  35093767 ggaaaatgttacctagacatcatttattctcatacacctttgtacatctcatgcactaggaagag 35093703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 48587023 - 48587083
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||| ||| |||||||  |||||||  ||| ||||||||||||||||||||||||||||||    
T  48587023 aatgatacatagacaccctttattcccatatacccttgtacatcccatgcattaggaagag 48587083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 21746137 - 21746202
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| | |||  ||| ||||||| |||||||||| |||||||||| | |||||||    
T  21746137 atacacccttgtacacctcatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 21746202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 43746524 - 43746435
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||| |||||||||| || ||||  ||| || | ||||||||||||||| | |||||| ||||||||  ||||| |||| ||||||||||    
T  43746524 aaagaaaaatgttacataaacaccctttgttgtcatacacccttgtacacctcatgcactaggaagaaagaagaggagatgaaagagaaa 43746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 9474798 - 9474915
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  9474798 aatgatacatagacactctttattctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 9474897  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  9474898 ccacgtgactacgtgtca 9474915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 50630627 - 50630519
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||||  |||||||| ||||||||||||||| || ||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||    
T  50630627 tagacaccatttattctcatacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgac 50630528  T
Q  219 tacgtgtca 227  Q
    |||||||||    
T  50630527 tacgtgtca 50630519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 27564657 - 27564774
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  27564657 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 27564756  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||||| |||||||||    
T  27564757 ccacgtgattacgtgtca 27564774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 32813429 - 32813308
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  32813429 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 32813330  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| ||||| ||||||||    
T  32813329 gggtccatgtgaccacgtgtca 32813308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 41758983 - 41758866
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  41758983 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 41758884  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||| ||||||||||||||    
T  41758883 ccatgtgactacgtgtca 41758866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 51898601 - 51898722
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||| | ||||||||||    
T  51898601 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcg 51898700  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     | |||||||||||||||||||    
T  51898701 ggatccacgtgactacgtgtca 51898722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 45044475 - 45044599
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||| ||||| |||||||||||| |||||  |||| ||||||||||| || ||||    
T  45044475 aaaggaaaatgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgtttgt 45044574  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    ||| |||||| ||| |||| |||||    
T  45044575 gcggggtccatgtggctacatgtca 45044599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 38632261 - 38632360
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||||||    
T  38632261 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtca 38632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 48716204 - 48716321
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| || || ||||| ||| | |||||||||| |||    
T  48716204 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggt 48716303  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  48716304 ccacgtgactacgtgtca 48716321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 43292 - 43193
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| || || ||||| ||||||||| | ||||||||||  ||||||||||||||||||||    
T  43292 tttattcttatacactcttgtacaccccatgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtca 43193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 2582075 - 2581976
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| ||| ||||| | |||||||||| |||||||||||||||||||||    
T  2582075 tttattctaatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 2581976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 3000470 - 3000380
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  3000470 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtca 3000380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 38595305 - 38595215
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  38595305 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtca 38595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 47452242 - 47452357
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||| ||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  47452242 aatgatacatagacactctttattcccatacatccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 47452341  T
Q  210 ccacgtgactacgtgt 225  Q
    ||||||||||||||||    
T  47452342 ccacgtgactacgtgt 47452357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 13414910 - 13414824
Alignment:
Q  139 acacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgt 225  Q
    ||||||| |||||  ||||||||||||||||| |||||||| || ||||||||||| |||||||| | |||||||||||||||||||    
T  13414910 acaccctagtacactccatgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgt 13414824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 5958916 - 5959024
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||||||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||    
T  5958916 aaggaaaatgttacatagacacattttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtg 5959015  T
Q  204 cgaggtcca 212  Q
    || ||||||    
T  5959016 cggggtcca 5959024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 11152293 - 11152417
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||  |||||||  |||||||| ||||| |||| |||| |||||||| | ||||||| ||||| ||||||||| |||||   |||||||    
T  11152293 aaaggaaaatgttatatagacaccatttattctcatacatccttctacaccccatgcactgggaagagagaagaggagaggaaaaagaaagcgtgcttgt 11152392  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    ||| |||| || |||||||||||||    
T  11152393 gcggggtctacatgactacgtgtca 11152417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 44548343 - 44548415
Alignment:
Q  155 catgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  44548343 catgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 44548415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 37649376 - 37649259
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| |||| |||| | ||||||||||   |    
T  37649376 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcggaat 37649277  T
Q  210 ccacgtgactacgtgtca 227  Q
     |||||||| ||||||||    
T  37649276 tcacgtgaccacgtgtca 37649259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 49811447 - 49811544
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||| |||||||  |||||||| |||||||||||| || | ||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  49811447 aaaatgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 49811544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 8346327 - 8346427
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaa-gatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtc 226  Q
    |||||||| ||||||| |||||||  |||||||||||||||||  || || ||||| ||||||||| | |||||||||  ||||||||||||||||||||    
T  8346327 tttattctcatacacctttgtacactccatgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtc 8346426  T
Q  227 a 227  Q
    |    
T  8346427 a 8346427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 44454165 - 44454064
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtac----atcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttg 201  Q
    |||||||||||| || ||||  ||||||||||||||||||| |||    | |||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  44454165 ggaaaatgttacataaacaccatttattcttatacacccttatactctgaccccatgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttg 44454066  T
Q  202 tg 203  Q
    ||    
T  44454065 tg 44454064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 47748626 - 47748525
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||| ||||| |   |||||| |||||||| |||||| ||||||||||| |||||  ||| |||||||||| ||| ||||||    
T  47748626 aaggaaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtg 47748527  T
Q  204 cg 205  Q
    ||    
T  47748526 cg 47748525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 50590918 - 50591024
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||| || ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  50590918 ggaaaatgttacatagataccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 50591017  T
Q  206 aggtcca 212  Q
     ||||||    
T  50591018 gggtcca 50591024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 44332289 - 44332395
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||| || ||||| |   |||||||||||||||  | ||| ||||||||||| |||||  ||| |||||||||| ||| ||||||||    
T  44332289 ggaaaatgttacatagataccttttaattgcatacacccttgtacactctatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcg 44332388  T
Q  206 aggtcca 212  Q
     ||||||    
T  44332389 gggtcca 44332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 6261052 - 6260940
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  |||||| | ||||||| ||||||| || ||  | ||| ||||| ||||| |||| |||| ||||||| ||||| ||||    
T  6261052 ggaaaatgttacatacacaccatttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaagaaatagaaaatgtgcttatgcg 6260953  T
Q  206 aggtccacgtgac 218  Q
     ||||||||||||    
T  6260952 gggtccacgtgac 6260940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 26274607 - 26274493
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  |||||||||||| |||| ||||||||||||||||   ||| ||||| ||||| ||| | | |||||||  | |    
T  26274607 aatgatacatagacaccctttattcccatacacccttgtgcatctcatgcattaggaagag---agaagagagaaaagaaaaagtgtacttgtgcaggat 26274511  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||| ||||||    
T  26274510 ccacgtgactatgtgtca 26274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 26440908 - 26440842
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||||||||||||| || |||   ||||||| ||||||||||||||||| |||| ||||| ||||||    
T  26440908 aaggaaaatgttacataaacatcctttattcctatacacccttgtacattccatacattacgaagag 26440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 37926356 - 37926442
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||| |||  |||||||  |||||||  ||||| ||||||||| ||||| |||||||||||| |||||  |||| |||||||||    
T  37926356 ggaaaatattatatagacaccatttattcacatacatccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaa 37926442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 41608411 - 41608497
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||||||| || |||| ||||| |   ||||||||||||||| || ||| ||||||||||| |||||  ||| ||||||||||    
T  41608411 ggaaaatgttacataaacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagagaaa 41608497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 7740893 - 7740808
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccac 213  Q
    ||||||||  |||| | ||||||||||||||||  |||||||| ||||| |||| |||| |||||||||  ||||| | |||||||    
T  7740893 tttattctcgtacatctttgtacatcccatgcaacaggaagagagaagaggagatgaaaaagaaaatatatttgtgtggggtccac 7740808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 34339968 - 34340075
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 207  Q
    |||||||||| ||||||| ||||||| | | |||| |||||||| || ||||| | ||||||| |||||  |||| ||| ||||| | ||||| | ||||    
T  34339968 aaaatgttacatagacaccttttattttca-acactcttgtacaccctatgcacttggaagagagaagagaagagaaaaaagaaactgtgcttatacgag 34340066  T
Q  208 gtccacgtg 216  Q
    |||||||||    
T  34340067 gtccacgtg 34340075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 2177548 - 2177436
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  2177548 aaggaaaatgttacagagacacattttattctcatacacccttgtacatccaatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtg 2177449  T
Q  204 cgaggtccacgtg 216  Q
     | | ||||||||    
T  2177448 tgggatccacgtg 2177436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 33149560 - 33149680
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  ||||||||  |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  33149560 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 33149659  T
Q  210 ccacgtgactacgtgtcaaat 230  Q
    |||||||||||||||||||||    
T  33149660 ccacgtgactacgtgtcaaat 33149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 31009171 - 31009049
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| |||||||  |||||||| ||||||| ||||||| |||||||| ||||||||| |||||  |||||||| ||||| | |||||||||    
T  31009171 aggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgc 31009072  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    | | |||||||||||||||||||    
T  31009071 gggatccacgtgactacgtgtca 31009049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 2740452 - 2740335
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  |||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||| | |||||||||| | |    
T  2740452 aatgatacatagacaccctttattcccatacacccttgtacatcccatgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggat 2740353  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  2740352 ccacgtgactacgtgtca 2740335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 13811821 - 13811713
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||||  |||||||  ||||| |||||||||||||||||||||||||||| ||||| |||||  |||||||| | |||||||||| ||||||||||||    
T  13811821 tagacaccatttattcccatacatccttgtacatcccatgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgac 13811722  T
Q  219 tacgtgtca 227  Q
    |||||||||    
T  13811721 tacgtgtca 13811713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 35943812 - 35943931
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 207  Q
    |||||||||| |||||||||||||||   ||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||| | |||||||| | |    
T  35943812 aaaatgttacatagacacattttatttccatacacccttgtacaccccatgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgtggg 35943911  T
Q  208 gtccacgtgactacgtgtca 227  Q
     ||||||| |||||||||||    
T  35943912 atccacgtaactacgtgtca 35943931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 18520806 - 18520923
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||| | ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||||| |||    
T  18520806 aatgatacatagacaccctttattttcatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 18520905  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  18520906 ccacgtgactacgtgtca 18520923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 35785377 - 35785260
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| | || ||||||| | |    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggat 35785278  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||| |||||||||||    
T  35785277 ccacgtaactacgtgtca 35785260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 40145585 - 40145468
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||| ||||||||||| | | |||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  40145585 aatgatacatagacaccctttattctcatatacccttgtacacctcgtgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 40145486  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  40145485 ccacgtgactacgtgtca 40145468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 36732873 - 36732981
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||    
T  36732873 tagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgac 36732972  T
Q  219 tacgtgtca 227  Q
    || ||||||    
T  36732973 tatgtgtca 36732981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 15409528 - 15409649
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||| | | ||||||||||    
T  15409528 ggaaaatgttacataaacaccctttattcgcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcg 15409627  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| ||| ||||||||||    
T  15409628 gggtccatgtggctacgtgtca 15409649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 6679879 - 6679759
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| ||||||   |||||| | ||||||||||||||| || || |||||||||||| ||||| ||||| ||||||||||| || |||||||     
T  6679879 gaaaatgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaagaggagagaaaagagaaaatgtgtttgtgcgg 6679780  T
Q  207 ggtccacgtgactacgtgtca 227  Q
    |||||| ||||| ||||||||    
T  6679779 ggtccatgtgaccacgtgtca 6679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 14831992 - 14831875
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||  ||| ||||| | |||||||||| | |    
T  14831992 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggat 14831893  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  14831892 ccacgtgactacgtgtca 14831875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 21370186 - 21370065
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  |||||| | ||||||| |||||||||  ||  | ||||||||  ||||||||||||||||||||||| || |||||||    
T  21370186 ggaaaatgttacataaacaccctttattttcatacacctttgtacatcttatatactaggaagaaagaagatgagaggaaagagaaaatgtgtttgtgcg 21370087  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||||||||| || |||||    
T  21370086 gggtccacgtgaccacatgtca 21370065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 6259916 - 6260031
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||| |   ||||||| ||||||| |||||||||||||| ||||||  |||| ||||| |||| |||||||||| | ||||| |    
T  6259916 aaaggaaaatgttacatagatatcctttattcctatacacacttgtacatcccatacattagtgagagagaagaggagatgaaagagaaagtgtgcttct 6260015  T
Q  203 gcgaggtccacgtgac 218  Q
    | |||||||| |||||    
T  6260016 gtgaggtccatgtgac 6260031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 20073433 - 20073544
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||  ||||||  ||||||||| ||||||| ||||| ||| |||| | ||||||||| ||||| ||||||||| ||||| | |||||||||    
T  20073433 aggaaaatgttagatagacattttttattctcatacacctttgtaaatctcatgaactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgc 20073532  T
Q  205 gaggtccacgtg 216  Q
      ||||||||||    
T  20073533 agggtccacgtg 20073544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 26720700 - 26720577
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||| |||||||||||| |||||  |||| ||||||||| | ||||||||    
T  26720700 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtg 26720601  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    || | |||| ||| | ||||||||    
T  26720600 cgggatccatgtggccacgtgtca 26720577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 26990449 - 26990326
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||| |||||||||||| |||||  |||| ||||||||| | ||||||||    
T  26990449 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtg 26990350  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    || | |||| ||| | ||||||||    
T  26990349 cgggatccatgtggccacgtgtca 26990326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 3921181 - 3921289
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | ||||||    
T  3921181 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtg 3921280  T
Q  204 cgaggtcca 212  Q
    || ||||||    
T  3921281 cggggtcca 3921289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 9603993 - 9603909
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||||||||  |||||||| ||||||| |||||||||||| ||| || |||||| ||||| || | ||||||||||    
T  9603993 aaaatgttacgtagacaccatttattctcatacacctttgtacatcccaagcactaagaagagagaagacgaaatgaaagagaaa 9603909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 36875564 - 36875644
Alignment:
Q  140 cacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgacta 220  Q
    |||||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| | |||||||||| | ||||||||||||    
T  36875564 cacccttgtacaccccatgtattaggaagagagaagaggagaaaaaagagaaagtgtgcttgtgcgggatccacgtgacta 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 2252085 - 2252192
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  2252085 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 2252184  T
Q  205 gaggtcca 212  Q
    | ||||||    
T  2252185 ggggtcca 2252192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 28177910 - 28177836
Alignment:
Q  153 cccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||| |||||||||||||||||| ||||| ||||||||| | || ||||||| |||||| ||||| ||||||||    
T  28177910 cccatacattaggaagagggaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtca 28177836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 33825243 - 33825339
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    ||||||||||| | |||||  |||||||| ||||| |||| |||| |||||||| ||||||||| |||||  |||  ||||||||| | ||||||||    
T  33825243 gaaaatgttacattgacaccatttattctcatacagccttctacaccccatgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtg 33825339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 39688814 - 39688901
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||| ||||||| ||||| |   ||||||| ||||||| || ||| ||||||||||| |||||  ||| ||||||||||    
T  39688814 aggaaaatgttacatagacaccttttaattgcatacacctttgtacaccctatgtattaggaagagagaagaaaagaagaaagagaaa 39688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 42414275 - 42414341
Alignment:
Q  161 ttaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||| ||||| || || ||||| ||| | |||||||||| ||||||| |||||||||||||    
T  42414275 ttaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacatgactacgtgtca 42414341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 31132454 - 31132405
Alignment:
Q  178 gagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||| ||||| ||| |||||||||||| ||||||||||||||| |||||    
T  31132454 gagagaaaagaaaaagtatgcttgtgcggggtccacgtgactacttgtca 31132405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 38837368 - 38837278
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  38837368 atacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 38837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 4999436 - 4999549
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||  ||||||||| | || ||||||| |||    
T  4999436 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggt 4999535  T
Q  210 ccacgtgactacgt 223  Q
    ||||||||||||||    
T  4999536 ccacgtgactacgt 4999549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 8080305 - 8080422
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  8080305 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 8080404  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  8080405 ccacgtgactacgtgtca 8080422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 11044356 - 11044239
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||| | ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| | | |||||||| |||    
T  11044356 aatgatacatagacactctttattttcatacacctttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgcggggt 11044257  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  11044256 ccacgtgactacgtgtca 11044239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 19330020 - 19329903
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  19330020 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 19329921  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||||| |||||||||    
T  19329920 ccacgtgattacgtgtca 19329903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 21234584 - 21234459
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| ||||||| ||||||||| ||||||| ||||||| ||||| |||||||||||| | | | |||||| |||||||||| |||||||||    
T  21234584 aggaaaatgttacatagacaccttttattctcatacaccattgtacaccccatacattaggaagagaggaaaggagaggtaagagaaaatgtgcttgtgc 21234485  T
Q  205 gaggtccacgtgactacgtgtcaaat 230  Q
    | ||| || ||| |||||||||||||    
T  21234484 ggggtacatgtggctacgtgtcaaat 21234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 35137689 - 35137596
Alignment:
Q  132 ttcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgt 225  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||||||||||||||||||    
T  35137689 ttctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgt 35137596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 46033719 - 46033840
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||| ||||| ||||||||| || ||||| ||||| ||||||||||||||||||||||    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaatagagaagaggagagaaaagagaaaatatgcttgtgcg 46033818  T
Q  206 aggtccacgtgactacgtgtca 227  Q
      || || ||||| ||||||||    
T  46033819 gagttcatgtgaccacgtgtca 46033840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 32951434 - 32951530
Alignment:
Q  129 ttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgt 225  Q
    ||||||| ||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||    
T  32951434 ttattctcatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgt 32951530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 38267191 - 38267101
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||| | |||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  38267191 atacaccttcgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 38267101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 40957858 - 40957768
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| | ||||||| || | |||||||||||||||||||    
T  40957858 atacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggatccacgtgactacgtgtca 40957768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 41423864 - 41423743
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || ||||  |||||||| ||||||| ||||||| |||||||| ||||||||| ||||| |||| |||||||||||||||||||| ||    
T  41423864 ggaaaatgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgtacg 41423765  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     | || ||||||| || |||||    
T  41423764 ggatctacgtgaccacatgtca 41423743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 19436118 - 19436226
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||||  |||||||| ||||||||||||||| ||||||||||||||||||  ||||  |||| ||||||||| | ||||| |||| | ||||||||||    
T  19436118 tagacaccatttattctcatacacccttgtacaccccatgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtgac 19436217  T
Q  219 tacgtgtca 227  Q
    |||||||||    
T  19436218 tacgtgtca 19436226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 3784139 - 3784056
Alignment:
Q  144 cttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |||||||||||||||||||    
T  3784139 cttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 3784056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 35523061 - 35522959
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| || ||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||    
T  35523061 aaaggaaaatgttacataaacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaagagagaaaagagaaagtgtgcttgt 35522962  T
Q  203 gcg 205  Q
    |||    
T  35522961 gcg 35522959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 16374743 - 16374863
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| |||||||  |||||||| ||||||| |||||||  |||| |||||||||||| ||| | |||| |||||||||  | |||||||| ||    
T  16374743 gaaaatgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtga 16374842  T
Q  207 ggtccacgtgactacgtgtca 227  Q
    | |||||||||| ||||||||    
T  16374843 gatccacgtgaccacgtgtca 16374863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 31736060 - 31735960
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||  |||| || ||||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||||    
T  31736060 aggaaaatgttagatagataccttttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 31735961  T
Q  205 g 205  Q
    |    
T  31735960 g 31735960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 3694518 - 3694428
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||| |||||||| |||||||||| ||||||| ||||| ||||| ||||||||| | |||||||||| | ||||| |||||||||||||    
T  3694518 atacactcttgtacaccccatgcattgggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacatgactacgtgtca 3694428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 8238398 - 8238274
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||| | ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  8238398 aaaggaaaatgttacatagacgccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 8238299  T
Q  203 gcgaggtccacgtgactacgtgtca 227  Q
    ||| ||||||  ||||||| |||||    
T  8238298 gcggggtccatatgactacatgtca 8238274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 7389548 - 7389450
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  ||||||||| ||||| |||||| ||||||||||| ||  | ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  7389548 tttattcccatacaccct-gtacaccccatgtattaggaagagagagtaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 7389450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 26296826 - 26296720
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    ||||||||||||||||||||  | ||||   ||||||||||||||| | ||| ||||| |||||| ||||| ||||| |||||||||||  |||||||||    
T  26296826 ggaaaatgttacgtagacaccatatatttccatacacccttgtacacctcatacattaagaagagagaagaggagagaaaagagaaaatgcgcttgtgcg 26296727  T
Q  206 aggtcca 212  Q
     ||||||    
T  26296726 gggtcca 26296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 27744225 - 27744321
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgctt 200  Q
    |||||||||||||  || ||||  |||||||  ||| | |||||||||||||||||| ||||||||| ||||| ||||||| ||||||||| |||||    
T  27744225 aaggaaaatgttatataaacaccatttattcccatatatccttgtacatcccatgcactaggaagagagaagaggagaggatagagaaaatgtgctt 27744321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 36208306 - 36208234
Alignment:
Q  155 catgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||  |||||||||||| || |||||    
T  36208306 catgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtca 36208234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 35468773 - 35468880
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| || |||| ||||||||| ||||| |||| |||||| |||| | ||||||||| ||||| || |||||||||||| | || ||||||     
T  35468773 ggaaaatgttacatatacaccttttattctcatacatccttatacatctcatgaactaggaagagagaagaggataggaaagagaaagtgtgtttgtgca 35468872  T
Q  206 aggtccac 213  Q
     |||||||    
T  35468873 gggtccac 35468880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 22343543 - 22343437
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  22343543 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 22343444  T
Q  206 aggtcca 212  Q
     ||||||    
T  22343443 gggtcca 22343437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 38044379 - 38044273
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| |||||||||||  ||||  ||| |||||||||| | | ||||||||    
T  38044379 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagaaaagagaagaagaaagagaaagtgtacttgtgcg 38044280  T
Q  206 aggtcca 212  Q
     ||||||    
T  38044279 gggtcca 38044273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 2318160 - 2318273
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattag-ga-agagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||| |||||||| ||||||   ||||||| |||||||  ||||||||||| || |||| |||||||||| |||||||||| ||||||| ||     
T  2318160 gaaaatgttacatagacacactttatttccatacacctttgtacactccatgcattagagagagagagaagatgagatgaaagagaaagtatgcttatgt 2318259  T
Q  205 gaggtccacgtgac 218  Q
      ||||||||||||    
T  2318260 cgggtccacgtgac 2318273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 46374741 - 46374806
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||| ||||| ||||||||||||    
T  46374741 aggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagag 46374806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 36362192 - 36362132
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||| ||| |||||||  |||||||| |||||||||||||||||||||| |||||||||||    
T  36362192 aatgatacatagacaccctttattctcatacacccttgtacatcccatgtattaggaagag 36362132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 41915921 - 41915817
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 207  Q
    |||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||| |    
T  41915921 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 41915822  T
Q  208 gtcca 212  Q
    |||||    
T  41915821 gtcca 41915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 32564341 - 32564430
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||| ||||||| |||||| |||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| ||||||||||    
T  32564341 aaaggaagatgttacatagacatattttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaa 32564430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 36361847 - 36361907
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 170  Q
    |||| ||| |||||||  |||||||| |||||||||||||||| ||||| |||||||||||    
T  36361847 aatgatacatagacaccctttattctcatacacccttgtacattccatgtattaggaagag 36361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 3434730 - 3434623
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| |||          |||||||| | |||||||||| | |    
T  3434730 aatgatacatagacaccctttattcccatacagccttgtacaccccatgcattaggaagagagaa----------aagagaaagtgtgcttgtgcgggat 3434641  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  3434640 ccacgtgactacgtgtca 3434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 40846028 - 40846117
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||||| |||| || ||||| |   ||||||||||||||||| |||   |||||||||| |||||  ||| ||||||||||    
T  40846028 aaaggaaaatgttacatagataccttttaattgcatacacccttgtacatctcatcttttaggaagagagaagagaagaagaaagagaaa 40846117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 7728086 - 7727982
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 207  Q
    |||||||||| ||||||| ||||| |   ||||| ||||||||| |||||  ||||||||||| |||||  ||| |||| ||||| | | |||||||| |    
T  7728086 aaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaacagaaagtgtacttgtgcggg 7727987  T
Q  208 gtcca 212  Q
    |||||    
T  7727986 gtcca 7727982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 18207339 - 18207251
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtg 216  Q
    |||||| | |||||||||||||||  | || || ||||||||| ||||| |||| |||||||||| | |||||||| | ||| ||||||    
T  18207339 tttattatcatacacccttgtacactctatccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggggttcacgtg 18207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 32046018 - 32045926
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgct 199  Q
    ||||||||||| ||||||   ||||||   ||||||||||||||||| |||  ||| | ||||| |||||||||| |||| ||||| ||||||    
T  32046018 gaaaatgttacatagacattctttatttacatacacccttgtacatctcatatatttgaaagagagaagatgagatgaaaaagaaagtatgct 32045926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 36361904 - 36361952
Alignment:
Q  179 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||| ||||||||| | |||||||| | |||||||||||||||||||||    
T  36361904 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtca 36361952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 39255844 - 39255928
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||||| |||||||  |||||| | |||||||||||||||| | || ||   ||||||| ||||| |||| ||||||||||    
T  39255844 aaaatgttacatagacaccctttattatcatacacccttgtacattctatccaccgggaagagagaagaggagatgaaagagaaa 39255928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 29240071 - 29239949
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | |||||||    
T  29240071 aaaggaaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgt 29239972  T
Q  203 gcgaggtccacgtgactacgtgt 225  Q
    | | |||||||||||||||||||    
T  29239971 gtggggtccacgtgactacgtgt 29239949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 42044316 - 42044406
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  42044316 atacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 42044406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 6034222 - 6034105
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 6034123  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||||||||| |||||    
T  6034122 ccacgtgactacatgtca 6034105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 41236525 - 41236408
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  41236525 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 41236426  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  41236425 ccacgtgactacgtgtca 41236408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 41824064 - 41823943
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||| ||||||| ||||||| | |||||||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  41824064 ggaaaatgttacatagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcg 41823965  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| ||||||||||||||    
T  41823964 gggtccatgtgactacgtgtca 41823943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 48182971 - 48183088
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  48182971 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 48183070  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  48183071 ccacgtgactacgtgtca 48183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 24995029 - 24995149
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||| ||||||| ||||||||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||    
T  24995029 aatgatacatagacaccctttattcccatacaccattgtacaccccatgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggt 24995128  T
Q  210 ccacgtgactacgtgtcaaat 230  Q
    |||||||||||||||||||||    
T  24995129 ccacgtgactacgtgtcaaat 24995149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 31910376 - 31910253
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  |||||||  |||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||| | ||||||||    
T  31910376 aaggaaaatgttacatagacaccatttattcccatacactcttgtacatcccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtg 31910277  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
    || |||||| ||| ||| ||||||    
T  31910276 cggggtccatgtggctatgtgtca 31910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 50052345 - 50052467
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| |||||||  |||||||  ||||||| ||||||| |  ||||| ||||||||| ||||| ||||||||||||||| | |||||||||    
T  50052345 aggaaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgc 50052444  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    | |||||||||||||||||||||    
T  50052445 ggggtccacgtgactacgtgtca 50052467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 480396 - 480486
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||| ||||||| |||||||||||||||||| ||||| ||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  480396 atacacctttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtca 480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 29234205 - 29234284
Alignment:
Q  148 tacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  29234205 tacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 29234284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 11511411 - 11511501
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| | ||||||||| |||||| |||||  |||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  11511411 atacacccttgtacacctcatgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 11511501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 48647645 - 48647763
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| ||||||   |||||| ||||||| | |||||||| | ||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  48647645 gaaaatgttacatagacatcatttatttttatacatctttgtacattctatgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcgg 48647744  T
Q  207 ggtccacgtgactacgtgt 225  Q
     ||||||||||| ||||||    
T  48647745 agtccacgtgaccacgtgt 48647763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 50526088 - 50526210
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| |||||   |||||||||    
T  50526088 aggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgc 50526187  T
Q  205 gaggtccacgtgactacgtgtca 227  Q
    |   |||||||||| ||||||||    
T  50526188 ggaatccacgtgaccacgtgtca 50526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 54473473 - 54473570
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgt 225  Q
    |||||||  |||||||||||||||  ||||| ||||||||||| ||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||||    
T  54473473 tttattcccatacacccttgtacactccatgtattaggaagagagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgt 54473570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 40574959 - 40574865
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||| ||||||||| | |||||||    
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacaccccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgt 40574865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 19670631 - 19670740
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  19670631 aaaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 19670730  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  19670731 gcggggtcca 19670740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 47986392 - 47986284
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||||| ||| |||   |||||||||||||||||||||| ||||||||||| |||||  | | |||||||||| | | |||||    
T  47986392 aaaggaaaatgttacatagacacctttaattgc-atacacccttgtacatcccatgtattaggaagagagaagagaataagaaagagaaagtgtacttgt 47986294  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  47986293 gcggggtcca 47986284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 50813810 - 50813909
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||||| |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  50813810 ggaaaatgttacatagacaccttttaattgcatacacccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 50813909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 56300086 - 56300169
Alignment:
Q  109 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||||||   |||||||| |||||  |||||||||| ||| |||||| ||||| ||||| |||||||||||||||    
T  56300086 aaatgttacgtagacattctttattctcatacaatcttgtacatctcatacattagaaagagagaagaggagaggaaagagaaa 56300169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 55475373 - 55475287
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| ||||||||||    
T  55475373 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaa 55475287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 17983658 - 17983767
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||| ||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  17983658 aaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 17983757  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  17983758 gcggggtcca 17983767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 18924407 - 18924512
Alignment:
Q  100 atcaaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgct 199  Q
    |||||||||||||||||| ||||||| ||||| |   |||||||||| |||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||    
T  18924407 atcaaaggaaaatgttacatagacaccttttaattgcatacacccttttacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtact 18924506  T
Q  200 tgtgcg 205  Q
    ||||||    
T  18924507 tgtgcg 18924512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 53352540 - 53352605
Alignment:
Q  162 taggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||| ||||||| | |||||||||||    
T  53352540 taggaagagagaagaggagagaaaagagaaagtatgcttgtgcggggtccacttaactacgtgtca 53352605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 3481828 - 3481715
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  |||||||| |||||||||          ||||| ||| ||||| ||||||| ||||||||||||| | ||||||||    
T  3481828 aaggaaaatgttacatagacaccctttattctcatacaccct----------atgcactagaaagagagaagatgggaggaaagagaaagtgtgcttgtg 3481739  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
     | |||||||||||||| ||||||    
T  3481738 tggggtccacgtgactatgtgtca 3481715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 23608395 - 23608296
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  ||||| || |||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||| |  || |||||||||||||||||    
T  23608395 tttattcccatacatccctgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtca 23608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 28480184 - 28480307
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28480184 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28480283  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
     | ||||||| ||||||| |||||    
T  28480284 tggggtccacatgactacatgtca 28480307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 28481059 - 28481182
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28481059 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28481158  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
     | ||||||| ||||||| |||||    
T  28481159 tggggtccacatgactacatgtca 28481182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 28481934 - 28482057
Alignment:
Q  104 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 203  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28481934 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28482033  T
Q  204 cgaggtccacgtgactacgtgtca 227  Q
     | ||||||| ||||||| |||||    
T  28482034 tggggtccacatgactacatgtca 28482057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 29547876 - 29547947
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaaga 176  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||    
T  29547876 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaaga 29547947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 29978065 - 29977946
Alignment:
Q  108 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 207  Q
    |||||||||| |||| |  |||||||| ||||||| |||||||| ||||| ||||||  ||||  ||||  ||| |||||||||| | |||||||| | |    
T  29978065 aaaatgttacatagatatcttttattcctatacacacttgtacaccccatacattagtgagagaaaagagaagatgaaagagaaagtgtgcttgtgtggg 29977966  T
Q  208 gtccacgtgactacgtgtca 227  Q
    |||||  |||||||||||||    
T  29977965 gtccatatgactacgtgtca 29977946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 47104723 - 47104640
Alignment:
Q  109 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||||||| |||||||||  ||||  || ||||| | ||||||||| |||||| ||||| |||| ||||||||||    
T  47104723 aaatgttacgtagacactttttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaa 47104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 44536663 - 44536750
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||||| ||||||||||||| |   |||||  |||||||| || ||| ||||||||||| |||||  ||| ||||||||||    
T  44536663 aggaaaatgttacatagacacattttaattgcatacattcttgtacaccctatgtattaggaagagagaagagaagaagaaagagaaa 44536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 29589655 - 29589744
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    |||||||||| |||| ||||||| ||||| |   |||||| |||||||| | |||| ||||||||||| |||||  ||| ||||||||||    
T  29589655 aaaggaaaatattacatagacaccttttaattgcatacactcttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaa 29589744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 11427796 - 11427679
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  11427796 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 11427697  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  11427696 ccacgtgactacgtgtca 11427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 17598732 - 17598615
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  17598732 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 17598633  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||| ||||||||    
T  17598632 ccacgtgacaacgtgtca 17598615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 31976430 - 31976309
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 31976331  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     ||| || ||||| ||||||||    
T  31976330 gggttcatgtgaccacgtgtca 31976309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 32869856 - 32869739
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  32869856 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 32869757  T
Q  210 ccacgtgactacgtgtca 227  Q
    ||||||||||||||||||    
T  32869756 ccacgtgactacgtgtca 32869739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22880598 - 22880697
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||  ||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  22880598 tttattcccatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 22880697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 23128076 - 23128166
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||| | |||||||| | | |||||||||||||||||||    
T  23128076 atacacccttgtacatcccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtca 23128166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 15832755 - 15832635
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| |||||||||||  |||||||  ||||||||||||||| |||||||||||||||||  ||||| ||||  ||||||||||| |  ||||||  | |    
T  15832755 aatgatacgtagacaccctttattccaatacacccttgtacaccccatgcattaggaagatagaagaggagaaaaaagagaaaatgtatttgtgcaggat 15832656  T
Q  210 ccacgtgactacgtgtcaaat 230  Q
    |||||||||||||||||||||    
T  15832655 ccacgtgactacgtgtcaaat 15832635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 6209422 - 6209501
Alignment:
Q  145 ttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtg 224  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||| ||||| ||||||||||||||||||    
T  6209422 ttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgtgactacgtg 6209501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 29858005 - 29857888
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| |||||  |||| ||||||||| | ||||| |||| | |    
T  29858005 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 29857906  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||| |||||||||||    
T  29857905 ccacgtaactacgtgtca 29857888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 31952945 - 31953055
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| |||||||  |||||||| ||||| |||| |||| |||||||| ||||||||| |||||  ||| |||||||||| | || ||||    
T  31952945 aaaggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgt 31953044  T
Q  203 gcgaggtccac 213  Q
    | |||||||||    
T  31953045 gtgaggtccac 31953055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 4231730 - 4231624
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  4231730 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 4231631  T
Q  206 aggtcca 212  Q
     ||||||    
T  4231630 gggtcca 4231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 31109351 - 31109439
Alignment:
Q  139 acacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||| | ||||||||||||||||||  |||| ||||| ||||||||| | | ||| |||| |||| ||||||||||||||||    
T  31109351 acacccttgtataccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtacttttgcggggtctacgtgactacgtgtca 31109439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 30341277 - 30341384
Alignment:
Q  105 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 204  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  30341277 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 30341376  T
Q  205 gaggtcca 212  Q
    | ||||||    
T  30341377 ggggtcca 30341384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 15989960 - 15990066
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  15989960 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 15990059  T
Q  206 aggtcca 212  Q
     ||||||    
T  15990060 gggtcca 15990066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 28536428 - 28536518
Alignment:
Q  128 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||| | ||||||||||||||| |||||||| |||||||||||||||  |||  ||||||||| | |||||||| | ||||||| ||||    
T  28536428 tttattttcatacacccttgtacaccccatgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtgtggggtccacatgac 28536518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 15507939 - 15508048
Alignment:
Q  103 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 202  Q
    ||||||||||||||| ||||||| ||||| |   ||||| ||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||    
T  15507939 aaaggaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgt 15508038  T
Q  203 gcgaggtcca 212  Q
    ||| ||||||    
T  15508039 gcggggtcca 15508048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 31110679 - 31110800
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 205  Q
    |||||||||||| ||||||   ||||||   ||||||| ||||||| ||||| |||||||||||| |||||  |||| ||||||||| | |||||||||     
T  31110679 ggaaaatgttacatagacatcctttatttccatacacctttgtacaccccatacattaggaagagagaagagtagagaaaagagaaagtgtgcttgtgca 31110778  T
Q  206 aggtccacgtgactacgtgtca 227  Q
     |||||| |||  |||||||||    
T  31110779 gggtccatgtggttacgtgtca 31110800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 946543 - 946472
Alignment:
Q  121 gacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||| ||||||| | |||||  |||||||||| |||||||||||||||| ||||| ||||| |||||||||    
T  946543 gacactttttattgtcatacattcttgtacatctcatgcattaggaagagagaagaggagagaaaagagaaa 946472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 30870183 - 30870084
Alignment:
Q  119 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 218  Q
    |||||||  |||||| | ||||||| ||||||| || ||  | ||| ||||| ||||| ||||||||||||||||| |||||||||| |||||| |||||    
T  30870183 tagacaccctttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgac 30870084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 22421997 - 22422042
Alignment:
Q  106 ggaaaatgttacgtagacacattttattcttatacacccttgtaca 151  Q
    |||||||||||| |||||||  |||||||| |||||||||||||||    
T  22421997 ggaaaatgttacatagacaccatttattctcatacacccttgtaca 22422042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 848 - 968
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| || ||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgg 947  T
Q  207 ggtccacgtgactacgtgtca 227  Q
    | | |||||||||||||||||    
T  948 gattcacgtgactacgtgtca 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 848 - 968
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 206  Q
    ||||||||||| || ||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgg 947  T
Q  207 ggtccacgtgactacgtgtca 227  Q
    | | |||||||||||||||||    
T  948 gattcacgtgactacgtgtca 968  T

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Target: scaffold0321 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 10058 - 10148
Alignment:
Q  137 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    ||||||||||||||| || ||||||||||||||| ||||| ||||| ||||||||| | ||||||| || |||||||||||||||||||||    
T  10058 atacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtca 10148  T

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Target: scaffold0237 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 4207 - 4090
Alignment:
Q  110 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 209  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| |||||  |||| ||||||||| | ||||| |||| | |    
T  4207 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 4108  T
Q  210 ccacgtgactacgtgtca 227  Q
    |||||| |||||||||||    
T  4107 ccacgtaactacgtgtca 4090  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 152679 - 152594
Alignment:
Q  107 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 192  Q
    ||||||||||| ||||||| ||||| |   |||||||||||||||||||||| ||||| ||||| |||||  ||| ||||||||||    
T  152679 gaaaatgttacatagacaccttttaattgcatacacccttgtacatcccatgtattagaaagagagaagagaagaagaaagagaaa 152594  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 17163 - 17115
Alignment:
Q  179 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 227  Q
    |||||||||||||||| |||||||||| |||||| ||||| || |||||    
T  17163 agaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtca 17115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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