View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7872_high_12 (Length: 211)
Name: NF7872_high_12
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 40081169 - 40081044
Alignment:
| Q |
19 |
aagcaagttcaccaagtacatgagggcacctttaaggttcttgacaaaggtaaaggacatgtacatccgtggtatgatccattgttctcatgatttggcc |
118 |
Q |
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| T |
40081169 |
aagcaagtttgcgaagtacatgaaggcacctttaaggttgttgacaaaggtaaaggacttgtacgtccgtggcatgatccattgttctcatgacttggcc |
40081070 |
T |
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| Q |
119 |
tttgtggatgcaaacatgggaattcc |
144 |
Q |
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| T |
40081069 |
tttgtggatgcaaacgtgggaattcc |
40081044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 40085629 - 40085528
Alignment:
| Q |
18 |
gaagcaagttcaccaagtacatgagggcacctttaaggttcttgacaaaggtaaaggacatgtacatccgtggtatgatccattgttctcatgatttggc |
117 |
Q |
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|||||||| |||||| |||||||| |||||| ||||||||| || |||| ||||||||||||| || ||| |||||||| ||||||| |||||| || |
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| T |
40085629 |
gaagcaagctcaccaggtacatgaaggcacccttaaggttcctggtaaagttaaaggacatgtatgtcaatggcatgatccaatgttctcgtgattttgc |
40085530 |
T |
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| Q |
118 |
ct |
119 |
Q |
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|| |
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| T |
40085529 |
ct |
40085528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 40081046 - 40081014
Alignment:
| Q |
163 |
tcctaacagctttagctctgcaacacctaccac |
195 |
Q |
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| T |
40081046 |
tcctaacagctttagctctgcaacacctaccac |
40081014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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