View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7872_high_2 (Length: 453)
Name: NF7872_high_2
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 34970649 - 34970215
Alignment:
| Q |
20 |
caaggtctcaaatcaatacgactaaacaaattcaagtgggttaatcat------atagtgaaattgttgttggtaatgtctatatatattgtatgaatgg |
113 |
Q |
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| T |
34970649 |
caaggtttcaaaccaatacgattagacaaatccaagtgggttaatcatgtgtgtatattgaaattgttgttggtaatgtctatatatattatatgaatgg |
34970550 |
T |
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| Q |
114 |
acactttcagctgagtgggacacgaaaattcacggttgtgcatgtcaatctataaggtttgaatcccttgcattagggattctcaacatttacacattca |
213 |
Q |
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| T |
34970549 |
acactttcagctgagtgggacacgaaaattcacggttgtgcatgtcaatctataaggtttgaatcccttgcattagggattctcaacatttacacattta |
34970450 |
T |
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| Q |
214 |
tgacattagtggttgtttgatcgagatcgaacaaatctatatttaagtttgtttcctgaataaagttaaaattaagaggcatcaatttaaaaaattaaga |
313 |
Q |
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| T |
34970449 |
tgacattagtggttgtttgatcgagattgaacaaatctatatttaagtttgtttcctgaataaagataaaattaagaggcatcaatttaaaaaattaaaa |
34970350 |
T |
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| Q |
314 |
ccgcatgattaagagaagtatgaattatgaatttgatatgaagatgaaacttcatttcatgaaactattaattgttcatagttcatactatctcatgacc |
413 |
Q |
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| T |
34970349 |
ccgcatgattaagagaagtatgaattatgaatttgatatgaagatgaaatttcatttcatgaaactattaattgttcatagttcatactatctcatgacc |
34970250 |
T |
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| Q |
414 |
aacaactgttacaaagtcgc-ttaagaataatata |
447 |
Q |
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| T |
34970249 |
aacaactgttacaaagtcgctttaaggataatata |
34970215 |
T |
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