View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7872_high_3 (Length: 406)
Name: NF7872_high_3
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 51351348 - 51351131
Alignment:
| Q |
1 |
tcggacaaagaatgagctacgtccaagttcaatcaattttctgttaatgtttcaccttcctcctaacaaactaattactaacatttgcctattcaaaaaa |
100 |
Q |
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| T |
51351348 |
tcggacaaagaatgagctacgtctaagttcaatcaattttctgttaacgtttcaccttcctcctaacaaactaattactaacatttgcctattcaaaaaa |
51351249 |
T |
|
| Q |
101 |
tctaacactaacccaacagcagacaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51351248 |
tctaacactaacccaacagcagacaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaa |
51351149 |
T |
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| Q |
201 |
atcacttgtgattcaatc |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
51351148 |
atcacttgtgattcaatc |
51351131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 51351123 - 51351006
Alignment:
| Q |
270 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgggt |
369 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcga--tatacttgcttgcacttggt-ggt |
51351027 |
T |
|
| Q |
370 |
ggtgaaatcaaaggctgtgtt |
390 |
Q |
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| T |
51351026 |
ggtgaaatcaaaggctgtgtt |
51351006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 51360494 - 51360375
Alignment:
| Q |
270 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgg |
367 |
Q |
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||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | |
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| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttc--aatatacttgcttgcacttggt-g |
51360398 |
T |
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| Q |
368 |
gtggtgaaatcaaaggctgtgtt |
390 |
Q |
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|||||| ||||| ||| |||||| |
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| T |
51360397 |
gtggtggaatcagaggttgtgtt |
51360375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
216 |
atctataactactctttatatcaactccataaaagagatttg |
257 |
Q |
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| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 12038084 - 12038052
Alignment:
| Q |
60 |
ctcctaacaaactaattactaacatttgcctat |
92 |
Q |
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| T |
12038084 |
ctcctaacaaactaactactaacatttgcctat |
12038052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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