View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7872_low_13 (Length: 250)
Name: NF7872_low_13
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 51351487 - 51351643
Alignment:
| Q |
1 |
tttcactgtttagttgatacataatttcactttaaattcagtgttacaaaatctattcaattcaaaattatatttgacgaatactcactcaaacataatt |
100 |
Q |
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| T |
51351487 |
tttcactgtttagttgatacataatttcactttaaattcagggttacaaaatctattcaattcaaaattatatttgacgaataatcactcaaacataatt |
51351586 |
T |
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| Q |
101 |
gagtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagcgttcattttcc |
157 |
Q |
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| T |
51351587 |
gagtgtgaagtgaagtgacaatgtttttatgttaaaagctaaaagcgttcattttcc |
51351643 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 51351901 - 51351971
Alignment:
| Q |
172 |
ttgggaaaaaatgtttgttacttgtttgtgtgcatgtttcgagtgtttgttcaagtctcatgctttcttctc |
243 |
Q |
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| T |
51351901 |
ttgggaaaaaatgtt-gttacttgtttgtgtgcatgtttcgagtgtttgttcaagtctcatgctttcttctc |
51351971 |
T |
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