View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7872_low_6 (Length: 356)
Name: NF7872_low_6
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 29198311 - 29197989
Alignment:
| Q |
16 |
atgaaatagtaccatagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaaatt |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29198311 |
atgaaatagtaccacagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaagtt |
29198212 |
T |
|
| Q |
116 |
tgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
215 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29198211 |
tgcttcatcaatctttgacaagcatacagaaaaattaaataatgtaaaaaaatacaaatccttaaataacgctagggtaattccaccaaacaggaatacc |
29198112 |
T |
|
| Q |
216 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29198111 |
aataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
29198012 |
T |
|
| Q |
316 |
accgatcttttctccggcataac |
338 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
29198011 |
accgatcttttctccggcataac |
29197989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 12271428 - 12271323
Alignment:
| Q |
177 |
ttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataa |
276 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
12271428 |
ttaaataatgttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataa |
12271329 |
T |
|
| Q |
277 |
ctcttt |
282 |
Q |
| |
|
|||||| |
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|
| T |
12271328 |
ctcttt |
12271323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 12288103 - 12287990
Alignment:
| Q |
168 |
tacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccga |
267 |
Q |
| |
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|||||||| ||||| || || ||||||||||||| || |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
12288103 |
tacaaatctttaaacaatgccggggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccga |
12288004 |
T |
|
| Q |
268 |
tcaccataactctt |
281 |
Q |
| |
|
|||||||||||||| |
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| T |
12288003 |
tcaccataactctt |
12287990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 12257512 - 12257322
Alignment:
| Q |
86 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
185 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
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| T |
12257512 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12257419 |
T |
|
| Q |
186 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttt |
282 |
Q |
| |
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| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
12257418 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattcttt |
12257322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 12264904 - 12264714
Alignment:
| Q |
86 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
185 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
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| T |
12264904 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12264811 |
T |
|
| Q |
186 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttt |
282 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
12264810 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattcttt |
12264714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 12283297 - 12283155
Alignment:
| Q |
122 |
atcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataac |
221 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||| |||| ||||||| | |
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| T |
12283297 |
atcaatctttgacaagcatgcaaaaaaattaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccaccaaaagggaaaaccaatagc |
12283200 |
T |
|
| Q |
222 |
aacactattagagttcttggtaccaacatcaattccagttaaccg |
266 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |||||||||||||| |
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|
| T |
12283199 |
aacaccattacagttcttgacaccaacatccattccagttaaccg |
12283155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 12267577 - 12267429
Alignment:
| Q |
119 |
ttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaat |
218 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||| | ||||||||||||| |||| |||| |||||| |
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| T |
12267577 |
ttcatcaatctttaacaagcatgcaaaaaaatgaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccatcaaaagggaaaaccaat |
12267480 |
T |
|
| Q |
219 |
aacaacactattagagttcttggtaccaac---atcaattccagttaaccg |
266 |
Q |
| |
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| |||||| ||||||||||||| |||||| ||| |||||||||||||| |
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|
| T |
12267479 |
agcaacaccattagagttcttgacaccaacaatatccattccagttaaccg |
12267429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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