View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7872_low_7 (Length: 316)
Name: NF7872_low_7
Description: NF7872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7872_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 49707712 - 49707400
Alignment:
| Q |
1 |
taccaacaataattaatatcaacatcaaactcaaaatttgcatatgttgcataataacctcaatagttaacaaaatgaaaccccaattccaaaagaattc |
100 |
Q |
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||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49707712 |
taccatcaataatcaatatcaatatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaattccaaaagaattc |
49707613 |
T |
|
| Q |
101 |
caccactatctatgaaagcactcaactactgtaaatggattggagcaacaaagatttgagatatattgcaataattttaattttgatggatatagtaata |
200 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49707612 |
caccactatctatgagagcgctcaactactgtaaatggattggaacaacaaaaatttgagatatattgcaataattttaattttgatggatatagtaata |
49707513 |
T |
|
| Q |
201 |
aagtagtgattttgggatgttgatctcagatctcagttgggttctgtgcgtgagcataaaa------------gaaccggtgaaggaagagaaccggtgg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
49707512 |
aagtagtgattttgggatgttgatctcagatctcagttgggttctgtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtgg |
49707413 |
T |
|
| Q |
289 |
aggtggtgatggc |
301 |
Q |
| |
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||||||||||||| |
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| T |
49707412 |
aggtggtgatggc |
49707400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 45883690 - 45883378
Alignment:
| Q |
1 |
taccaacaataattaatatcaacatcaaactcaaaatttgcatatgttgcataataacctcaatagttaacaaaatgaaaccccaattccaaaagaattc |
100 |
Q |
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||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45883690 |
taccagcaataatcaatatcaatatcaaactcaaaatttgcatatgttgcataataatctcaatagttaacaaaatgaaaccccaattccaaaagaattc |
45883591 |
T |
|
| Q |
101 |
caccactatctatgaaagcactcaactactgtaaatggattggagcaacaaagatttgagatatattgcaataattttaattttgatggatatagtaata |
200 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45883590 |
caccactatctatgagagcgctcaactactgtaaatggattggaacaacaaaaatttgagatatattgcaataattttaattttgatggatatagtaata |
45883491 |
T |
|
| Q |
201 |
aagtagtgattttgggatgttgatctcagatctcagttgggttctgtgcgtgagcataaaa------------gaaccggtgaaggaagagaaccggtgg |
288 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
45883490 |
aagtagtgattttgggatgttgatcttagatctcagttgggttatgtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtgg |
45883391 |
T |
|
| Q |
289 |
aggtggtgatggc |
301 |
Q |
| |
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||||||||||||| |
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| T |
45883390 |
aggtggtgatggc |
45883378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 34548684 - 34548517
Alignment:
| Q |
146 |
caacaaagatttgagatatattgcaataattttaattttgatggatatagtaataaagtagtgattttgggatgttgatctcagatctcagttgggttct |
245 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548684 |
caacaaaaatttgagatatattgcaataattttaattttgatggatatagtaataaagtagtgattttgggatgttgatctcagatctcagttgggttct |
34548585 |
T |
|
| Q |
246 |
gtgcgtgagcataaaa------------gaaccggtgaaggaagagaaccggtggaggtggtgatggc |
301 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34548584 |
gtcggtgagcataaaagaattggtgaaggaaccggtgaaggaagagaaccggtggaggtggtgatggc |
34548517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 2567281 - 2567238
Alignment:
| Q |
66 |
gttaacaaaatgaaaccccaattccaaaagaattccaccactat |
109 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| |||| |
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| T |
2567281 |
gttaacaaaataaaaccccaaatccaaaagaattccaccgctat |
2567238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 2567165 - 2567113
Alignment:
| Q |
178 |
taattttgatggatatagtaataaagtagtgattttgggatg-ttgatctcag |
229 |
Q |
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|||| ||||||||||| |||||||||| || ||||||||||| |||||||||| |
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| T |
2567165 |
taatattgatggatatcgtaataaagttgtaattttgggatgtttgatctcag |
2567113 |
T |
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