View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7873_low_1 (Length: 820)
Name: NF7873_low_1
Description: NF7873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7873_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 135 - 797
Target Start/End: Complemental strand, 32230940 - 32230283
Alignment:
| Q |
135 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtattttctcaatgtttgttacttttagaaaatcaaaagtaagacataagtataaag |
234 |
Q |
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| T |
32230940 |
ttaaaactttgatgtcaaatattgtgccctttgatttttatgtgtatattctcaatgtttgttacttttagaaaatcaaaagtaagacacaagtataaag |
32230841 |
T |
|
| Q |
235 |
acaaataaacatatgcggtatcacattccacgtatgtattttgatgttccactaacacaaactcaaggttatattttgattgatggaatgaagtagaata |
334 |
Q |
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| T |
32230840 |
ataaataaacatatgcggtatcacattccaagtatgtattttaatgttccaataacacaaactcaaggttatattttgattgatggaatgaagtagaata |
32230741 |
T |
|
| Q |
335 |
agatagtgttatattgttttaatagtctttaaaagagtggaatagaaaggaattcaatggcatccattcaatcacatttattcacattttgcatcccctt |
434 |
Q |
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| T |
32230740 |
agatagtgttatattgttttaatagtctttaaaagagtgaaatagaaaggaattcgatggcatccattcaatcacatttattcacattttgcatcccctt |
32230641 |
T |
|
| Q |
435 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
534 |
Q |
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| T |
32230640 |
caatttgggaggaatggaacaattgtaaatttatttttatattgattaaattacctttttatccatatttgcaagtaataacgtattgttgactactgat |
32230541 |
T |
|
| Q |
535 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
634 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230540 |
aagcaaatgaaatcttactttgttgtctttgtttatcgatgatgctgaaagtaatagtgtagtattgttcctttagtaagaaactttgataaatcttggc |
32230441 |
T |
|
| Q |
635 |
acaaaacgtacatatataacatgcagagataaataaacactttagtcatcttgtaaatttaatttccgagatagaaatcttgttgattccccagtttgga |
734 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230440 |
acaaa----acatatataacatgcagagataaataaacac-ttagtcatcttgtaaatttaatttccgagatagaaatcttgttgattccccagtttgga |
32230346 |
T |
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| Q |
735 |
aatattcggtggatgaatcttatacggtaaaatcggcatattctcaatgtatgtctcttgctg |
797 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32230345 |
aatatttggtggatggatcttatacggtaaaatcggcatattctcaatgtatgtctcttgctg |
32230283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 32231101 - 32230981
Alignment:
| Q |
9 |
ggtatattattctcaacaaattgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
108 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32231101 |
ggtatattattctcaacaaactgagaccattttaagtgacattttataatttagatgatatatttaacaatttgcaaaatgaaatgctaatttaattggt |
32231002 |
T |
|
| Q |
109 |
gatcatactttctataatatg |
129 |
Q |
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||||||||||||||||||||| |
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| T |
32231001 |
gatcatactttctataatatg |
32230981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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