View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7873_low_2 (Length: 579)
Name: NF7873_low_2
Description: NF7873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7873_low_2 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Original strand, 20862200 - 20862745
Alignment:
| Q |
18 |
gtaaggagtactcatagattctttaactttggtttgttttctttgttcttttccttataccattttcttacatatattccatagtttgatactggccatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20862200 |
gtaaggagtactcatagattctttaactttggtttgttttctttgttcttttccttataccattttcttacatatattccatagtttgatactggccttt |
20862299 |
T |
|
| Q |
118 |
tctttttactaaagaaagatctatactcactttaacatttcataagaagnnnnnnnnnnccagagatgagtaattttgctgagaaaaaaccacatgcagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20862300 |
tctttttactaaagaaagatctatactcactttaacatttcataagaa-----aaaaaaccagagatgagtaattttgctgagaaaaaaccacatgcagt |
20862394 |
T |
|
| Q |
218 |
gttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20862395 |
gttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaa |
20862494 |
T |
|
| Q |
318 |
tacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggttcaacttcacatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20862495 |
tacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggttcaacttcacatg |
20862594 |
T |
|
| Q |
418 |
gtgatgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttcgtgaacttcttgccaaacttcacgactcttc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20862595 |
gtgatgatgttagtcaagacttccaatctcttcgtgaattaatcagaacgaacttcatcgacagttttcgtgaacttcttgccaaacttcatgactcttc |
20862694 |
T |
|
| Q |
518 |
caaatctggtcttatacctcctgttacttgcttagtttctgatagtttcat |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20862695 |
caaatctggtcttatacctcctgttacttgcttagtttctgatagtttcat |
20862745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 404
Target Start/End: Complemental strand, 1676079 - 1675878
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||| ||||||| ||||| | |||||||||| |||||| |||||||||||| |||| |||||||||||||| ||||||||||||||| | | |||| |
|
|
| T |
1676079 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1675980 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
| |||||| |||||||||||||||||||| ||||| || |||| ||||||| |||| |||||||||||||| ||| ||||||| ||| | ||||||| |
|
|
| T |
1675979 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatg |
1675880 |
T |
|
| Q |
403 |
gt |
404 |
Q |
| |
|
|| |
|
|
| T |
1675879 |
gt |
1675878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 39)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 181 - 556
Target Start/End: Complemental strand, 3173583 - 3173202
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
3173583 |
agatgagtaactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttca |
3173484 |
T |
|
| Q |
281 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
380 |
Q |
| |
|
| ||||||||||| ||||||| ||||| || |||||||||||||||||||| ||||| || |||| |||||||| ||||||||||||||| ||| ||| |
|
|
| T |
3173483 |
ctttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgatttt |
3173384 |
T |
|
| Q |
381 |
cgctttgagaccgttccagatggttcaacttca---catggtga---tgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaac-ttc |
473 |
Q |
| |
|
||||||||| | |||||||||| ||||||| | ||||| |||||||||||||||||| | ||||| || || ||| | | |||| ||| |
|
|
| T |
3173383 |
aactttgagactataccagatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaatcatcaagaactttc |
3173284 |
T |
|
| Q |
474 |
atcgacagttttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttc |
556 |
Q |
| |
|
|||| | ||||||||||||| |||| ||||||||||| ||| | | |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3173283 |
atcg-cttttttcgtgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtttc |
3173202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 207 - 410
Target Start/End: Complemental strand, 4517894 - 4517691
Alignment:
| Q |
207 |
ccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttg |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||| |||| |
|
|
| T |
4517894 |
ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg |
4517795 |
T |
|
| Q |
307 |
tcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggttc |
406 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| || |||| ||||||| | ||||||||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
4517794 |
tcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggttt |
4517695 |
T |
|
| Q |
407 |
aact |
410 |
Q |
| |
|
|||| |
|
|
| T |
4517694 |
aact |
4517691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 181 - 410
Target Start/End: Original strand, 4488745 - 4488974
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||||| |||| |||| ||| ||||||||||||||||| |||| |||| ||||||| ||||||||| || |||| ||||||| |||||||||||| |
|
|
| T |
4488745 |
agatgagtaactttgaagagagaaagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttca |
4488844 |
T |
|
| Q |
281 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
380 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| || |||| ||||||| ||||||||||||| ||||| ||| |
|
|
| T |
4488845 |
ccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgatttt |
4488944 |
T |
|
| Q |
381 |
cgctttgagaccgttccagatggttcaact |
410 |
Q |
| |
|
|||||||||| |||||||||||| |||| |
|
|
| T |
4488945 |
agctttgagactattccagatggtttaact |
4488974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 181 - 560
Target Start/End: Complemental strand, 4507491 - 4507106
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||| | |||||||||| |||||| |||||||||||| |||| |||||||| || || ||||| |
|
|
| T |
4507491 |
agatgagtaattttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttca |
4507392 |
T |
|
| Q |
281 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
380 |
Q |
| |
|
|||| |||||||| ||||||| ||||| || || ||||||||||||||||||||||| || |||| ||| || ||||||||||||||||||| ||| |
|
|
| T |
4507391 |
ccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgatttt |
4507292 |
T |
|
| Q |
381 |
cgctttgagaccgttccagatggttcaacttca---catggtga---tgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttca |
474 |
Q |
| |
|
||||||||| | |||||||||| |||| || ||||||| |||||||| || |||||| ||||| ||||||||| ||||||| ||| || | |
|
|
| T |
4507291 |
aactttgagactctaccagatggtttaactccaatggatggtgatggtgatgttaatccagacttgaaatctattcgtgaatcgattagaaagaaattta |
4507192 |
T |
|
| Q |
475 |
tcgacagttttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
| || |||||| |||||||| || | |||| | |||||| | |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
4507191 |
tttacccttttcgcgaacttctagctagacttgatgactctgcgaaatctggtcttgtgcctcctgttacttgcttagtttctgat |
4507106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 183 - 560
Target Start/End: Complemental strand, 4576033 - 4575650
Alignment:
| Q |
183 |
atgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcacc |
282 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||||| |||| ||||||| ||||||||| || |||| ||| |||||||||| ||||||| |
|
|
| T |
4576033 |
atgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcacc |
4575934 |
T |
|
| Q |
283 |
ttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcg |
382 |
Q |
| |
|
||||||||||| ||||||| ||||| || |||||||||||||||||||| ||||| || |||| ||| || ||||||||||||||||||||||| |
|
|
| T |
4575933 |
ttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaa |
4575834 |
T |
|
| Q |
383 |
ctttgagaccgttccagatggttcaacttca---catgg---tgatgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatc |
476 |
Q |
| |
|
||||||||| | |||||||||| |||| || |||| || |||||| ||||||||| | || |||||| |||||| ||| | ||||||||| | |
|
|
| T |
4575833 |
ctttgagactataccagatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctcttggtgaatcaatcataacgaactttcgc |
4575734 |
T |
|
| Q |
477 |
gacagttttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
|| ||| |||||||||||| |||||||| |||||| ||| |||||||||| || || || |||||||||||||||||| |
|
|
| T |
4575733 |
cacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgat |
4575650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 203 - 560
Target Start/End: Original strand, 4513549 - 4513915
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4513549 |
aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc |
4513648 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
||||| || || ||||||||||||||||| ||||| || |||| ||||| | | |||||||||||||| || |||||||||||||| |||| |||| |
|
|
| T |
4513649 |
tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatg |
4513748 |
T |
|
| Q |
403 |
gttcaacttca---------catggtgatgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttcgtgaact |
493 |
Q |
| |
|
||| |||| || |||||| ||||| || ||||||||| ||||||||| |||| ||| |||| ||| | |||||| |||||| ||||| |
|
|
| T |
4513749 |
gtttaactccaatggatggcgatggtggtgatgctactcaagacttgatatctcttcgcgaatcaatcagaaagaattgcatcgaaccttttcgcgaact |
4513848 |
T |
|
| Q |
494 |
tcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
| | || |||||| | |||||| | ||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
4513849 |
tttagctaaacttaatgactctgcaaaagccggtcttataccttttgttacttgcttagtttctgat |
4513915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 181 - 410
Target Start/End: Complemental strand, 4482445 - 4482216
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||| ||||||| |||| |||||| ||||||||| || |||| ||| ||| |||||||||||| |
|
|
| T |
4482445 |
agatgagtaactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttca |
4482346 |
T |
|
| Q |
281 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
380 |
Q |
| |
|
||||||||||||| ||||||| |||||||| || ||||||||||||||||| ||||| || |||| |||||||| | ||||||||||||||||||| ||| |
|
|
| T |
4482345 |
ccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgatttt |
4482246 |
T |
|
| Q |
381 |
cgctttgagaccgttccagatggttcaact |
410 |
Q |
| |
|
|||||| || | |||||||||| |||| |
|
|
| T |
4482245 |
acctttgaaacgataccagatggtttaact |
4482216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 201 - 561
Target Start/End: Complemental strand, 4558685 - 4558319
Alignment:
| Q |
201 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
300 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
4558685 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataa |
4558586 |
T |
|
| Q |
301 |
catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccaga |
400 |
Q |
| |
|
| | ||| || ||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||| |||||||||| |||| || |
|
|
| T |
4558585 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccgga |
4558486 |
T |
|
| Q |
401 |
tggttcaacttca---catggtgat---gatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttcgtgaactt |
494 |
Q |
| |
|
||||| |||| || |||||||| ||||||||||||||| | | ||||| || ||| ||| |||| ||||||| | | ||| || |||||| |
|
|
| T |
4558485 |
tggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaactt |
4558386 |
T |
|
| Q |
495 |
cttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgata |
561 |
Q |
| |
|
||||| | ||| | |||||| | | |||||||||| | ||||| ||||||||| |||||||||||| |
|
|
| T |
4558385 |
cttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgata |
4558319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 178 - 410
Target Start/End: Complemental strand, 4581597 - 4581365
Alignment:
| Q |
178 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
277 |
Q |
| |
|
|||| |||||| ||||| |||| ||||| |||||||||||||| | |||||||||||||||||| ||||||| |||| | ||| ||||||||| || || |
|
|
| T |
4581597 |
cagaaatgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttct |
4581498 |
T |
|
| Q |
278 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgac |
377 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||| || |||| ||||||| | | |||||||||||||| || |
|
|
| T |
4581497 |
tcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgat |
4581398 |
T |
|
| Q |
378 |
tttcgctttgagaccgttccagatggttcaact |
410 |
Q |
| |
|
||| ||||||||| |||||||||||| |||| |
|
|
| T |
4581397 |
tttacctttgagactattccagatggtttaact |
4581365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 203 - 389
Target Start/End: Original strand, 4612288 - 4612474
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||| | | |||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4612288 |
aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca |
4612387 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgag |
389 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||| || |||| ||||||| |||||| |||||||||||| ||| ||||||| |
|
|
| T |
4612388 |
ttcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgag |
4612474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 203 - 405
Target Start/End: Complemental strand, 4618859 - 4618657
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
||||||||||| ||| | | |||||||||| ||||||| |||||||||||| |||| ||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
4618859 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
4618760 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
||||| || || ||||||||||||||||||||||| || |||| ||||||| | |||||||||||||| |||||| |||||||| | ||||||||| |
|
|
| T |
4618759 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatg |
4618660 |
T |
|
| Q |
403 |
gtt |
405 |
Q |
| |
|
||| |
|
|
| T |
4618659 |
gtt |
4618657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 203 - 561
Target Start/End: Complemental strand, 4587190 - 4586826
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||| ||||| ||||||| |||| |||| ||||||| |||||||||||| |||| |||||||| ||||| ||||||||| |||| ||| ||||||| |
|
|
| T |
4587190 |
aaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacc |
4587091 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||||| | ||||| ||||||||| ||| ||||| ||| |||||||||| ||||||||| |
|
|
| T |
4587090 |
tttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatg |
4586991 |
T |
|
| Q |
403 |
gttcaacttca---catggtga---tgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttcgtgaacttct |
496 |
Q |
| |
|
||| |||| || ||||||| |||||||||||||||| | | ||||| || ||| ||| |||| ||||||| | | ||| || |||||||| |
|
|
| T |
4586990 |
gtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcctacaacctttccgcgaacttct |
4586891 |
T |
|
| Q |
497 |
tgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgata |
561 |
Q |
| |
|
||| | |||| | |||||| | | |||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
4586890 |
tgctagacttaatgactctgcaacatctggtcttatccctccagtcacttgtatagtttctgata |
4586826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 201 - 405
Target Start/End: Complemental strand, 4623867 - 4623663
Alignment:
| Q |
201 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
300 |
Q |
| |
|
||||| |||||||| ||||| | | |||||||| |||||||||||||||||||| |||| ||||||||||| || ||| |||||| ||||||| |||||| |
|
|
| T |
4623867 |
aaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataa |
4623768 |
T |
|
| Q |
301 |
catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccaga |
400 |
Q |
| |
|
| |||| | || ||||||||||||||||||||||| || |||| ||||||| |||||||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
4623767 |
cctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccaga |
4623668 |
T |
|
| Q |
401 |
tggtt |
405 |
Q |
| |
|
||||| |
|
|
| T |
4623667 |
tggtt |
4623663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 4603668 - 4603534
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
||||| |||||| ||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
4603668 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
4603569 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgct |
337 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |
|
|
| T |
4603568 |
tttgtcaacaccgaatacaatcacaaacgtttgct |
4603534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 207 - 405
Target Start/End: Complemental strand, 4627704 - 4627506
Alignment:
| Q |
207 |
ccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttg |
306 |
Q |
| |
|
|||||||| ||||| | ||||| |||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
4627704 |
ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg |
4627605 |
T |
|
| Q |
307 |
tcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggtt |
405 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || |||| ||| || |||||||||||||| ||| ||| |||||||||| | |||||||||| |
|
|
| T |
4627604 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtt |
4627506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 220 - 410
Target Start/End: Complemental strand, 4569611 - 4569425
Alignment:
| Q |
220 |
taactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaata |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||||||| || || |
|
|
| T |
4569611 |
taactccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga--- |
4569515 |
T |
|
| Q |
320 |
caatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggttcaact |
410 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||| | ||||||||||||||||||| ||| ||||||||| |||||||||||| |||| |
|
|
| T |
4569514 |
-aatcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatggtttaact |
4569425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 198 - 560
Target Start/End: Complemental strand, 4562229 - 4561857
Alignment:
| Q |
198 |
gagaaaaaaccacatgcagtg----ttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttt |
293 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||| ||||||||||||||||| || |||| ||| |||||||||| |||||||| ||||||||| |
|
|
| T |
4562229 |
gagaaaaggccacatgcagtgttaattaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggcttt |
4562130 |
T |
|
| Q |
294 |
tacat-aacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagacc |
392 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||||||| |||| ||| |||| ||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
4562129 |
cacataaacctttgttaacactgaatacaatcacaaacgtttgc-taaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagact |
4562031 |
T |
|
| Q |
393 |
gttccagatggttcaacttca---catggtga---tgatgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttc |
486 |
Q |
| |
|
| |||||||||| |||| || ||||||| |||| ||||||||||| | || |||||| |||||| ||| | ||||||||| | || ||| |
|
|
| T |
4562030 |
ataccagatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctcttggtgaatcaatcataacgaactttcaccacttctttg |
4561931 |
T |
|
| Q |
487 |
gtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||| |||||||||| || || || |||||||||||||||||| |
|
|
| T |
4561930 |
atgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgat |
4561857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 405
Target Start/End: Complemental strand, 4462790 - 4462563
Alignment:
| Q |
178 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
277 |
Q |
| |
|
|||| |||||||||||||| ||| ||| |||||||| ||||| | ||||| |||| ||||| ||||||||| || |||| ||||||| ||||||||| |
|
|
| T |
4462790 |
cagatatgagtaattttgcaaagacaaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactact |
4462691 |
T |
|
| Q |
278 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtcc-aataccctttgatggtttcactga |
376 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||||| || |||| ||||| ||| | | | |||||||||||||| |
|
|
| T |
4462690 |
tcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctc-tagatggtttcactga |
4462592 |
T |
|
| Q |
377 |
ctttcgctttgagaccgttccagatggtt |
405 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |
|
|
| T |
4462591 |
ctttaactttgagaccattccaaatggtt |
4462563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 4572526 - 4572354
Alignment:
| Q |
201 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
300 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| |||| ||||||||||| | |||||||||||||| ||| |||||| |
|
|
| T |
4572526 |
aaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataa |
4572427 |
T |
|
| Q |
301 |
catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcac |
373 |
Q |
| |
|
| | ||| || |||||||||||||||||||| ||||| ||||||| |||| || |||||||||||||||| |
|
|
| T |
4572426 |
cctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcac |
4572354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 183 - 405
Target Start/End: Complemental strand, 4471492 - 4471270
Alignment:
| Q |
183 |
atgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcacc |
282 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| || || | ||||| |||| |||||| ||||||||| || |||| ||||||||||| || ||||||| |
|
|
| T |
4471492 |
atgagtaattttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcacc |
4471393 |
T |
|
| Q |
283 |
ttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtcc-aataccctttgatggtttcactgactttc |
381 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||||||||||||| |||||| || |||| ||||| || | | |||||||||||||||||||| |
|
|
| T |
4471392 |
ttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctc-ttgatggtttcactgacttta |
4471294 |
T |
|
| Q |
382 |
gctttgagaccgttccagatggtt |
405 |
Q |
| |
|
|||||||||| ||||| |||||| |
|
|
| T |
4471293 |
actttgagaccattccaaatggtt |
4471270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 178 - 404
Target Start/End: Original strand, 4265602 - 4265828
Alignment:
| Q |
178 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
277 |
Q |
| |
|
|||| |||||||||||||| || ||| |||||||| ||||| | |||| |||| ||||||| ||||||||| || |||| || |||| ||| || || |
|
|
| T |
4265602 |
cagatatgagtaattttgcaaagccaaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttct |
4265701 |
T |
|
| Q |
278 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgac |
377 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||| ||||||| | |||||||||||| |||| |
|
|
| T |
4265702 |
tcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgac |
4265801 |
T |
|
| Q |
378 |
tttcgctttgagaccgttccagatggt |
404 |
Q |
| |
|
||| ||||||||| | ||||||||| |
|
|
| T |
4265802 |
tttaagtttgagaccataccagatggt |
4265828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 404
Target Start/End: Complemental strand, 4594568 - 4594367
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||||||||| ||||| | |||| |||||||||||| ||||| |||||| |||| ||||| |||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
4594568 |
aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc |
4594469 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || |||| ||||||| |||| ||||||||| ||| ||| ||||||| ||| | ||||||| |
|
|
| T |
4594468 |
tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatg |
4594369 |
T |
|
| Q |
403 |
gt |
404 |
Q |
| |
|
|| |
|
|
| T |
4594368 |
gt |
4594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 4565587 - 4565436
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||||||||| ||||| | |||| |||| ||||||| ||||| |||||| |||| ||||| |||||||| |||||||||||||| ||| | ||||| |
|
|
| T |
4565587 |
aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc |
4565488 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaa |
354 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || |||| ||||||| |
|
|
| T |
4565487 |
tttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaa |
4565436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 4497793 - 4497899
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||||||||||| |||| || |||| |||||||||||| |||| ||||||| |||| ||||||| |
|
|
| T |
4497793 |
agatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttca |
4497892 |
T |
|
| Q |
281 |
ccttaga |
287 |
Q |
| |
|
||||||| |
|
|
| T |
4497893 |
ccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 4258721 - 4258880
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaa---ccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
277 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||||| ||||| | |||||||||| |||||| |||||||||||| |||| |||||||| || || || |
|
|
| T |
4258721 |
agatgagttattttgctgataataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttct |
4258820 |
T |
|
| Q |
278 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgct |
337 |
Q |
| |
|
|||| ||| ||| ||| ||||||| |||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
4258821 |
tcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgct |
4258880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 283 - 410
Target Start/End: Original strand, 4502943 - 4503070
Alignment:
| Q |
283 |
ttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcg |
382 |
Q |
| |
|
||||||| ||| ||||||| |||||||| || ||||||||||||||||||||||| || |||| ||||||| ||||||||||||||| ||| ||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
383 |
ctttgagaccgttccagatggttcaact |
410 |
Q |
| |
|
|||||||||| | |||||||||| |||| |
|
|
| T |
4503043 |
ctttgagaccataccagatggtttaact |
4503070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 201 - 337
Target Start/End: Complemental strand, 4599723 - 4599587
Alignment:
| Q |
201 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
300 |
Q |
| |
|
||||||| ||||||||| || | ||||| ||| ||||||| ||||||||| | | | ||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
4599723 |
aaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataa |
4599624 |
T |
|
| Q |
301 |
catttgtcaatactgaatacaatcacaaacgcttgct |
337 |
Q |
| |
|
| || || || || || |||||||||||||||||||| |
|
|
| T |
4599623 |
ccttcgtgaacaccgagtacaatcacaaacgcttgct |
4599587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 374
Target Start/End: Original strand, 4255395 - 4255550
Alignment:
| Q |
207 |
ccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttg |
306 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||||||| |||||||||| | | || |||||||||||| ||||||| |||| ||||||| | |
|
|
| T |
4255395 |
ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt------------g |
4255482 |
T |
|
| Q |
307 |
tcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcact |
374 |
Q |
| |
|
|||| || ||||||||||||||||||||||| | |||| ||||||| | |||||||||||| |||| |
|
|
| T |
4255483 |
tcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggttccact |
4255550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 4298180 - 4298269
Alignment:
| Q |
315 |
gaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatggt |
404 |
Q |
| |
|
|||||||||||||||| | |||| | |||| |||||||| | | |||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
4298180 |
gaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggt |
4298269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 561
Target Start/End: Complemental strand, 4581287 - 4581208
Alignment:
| Q |
482 |
ttttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgata |
561 |
Q |
| |
|
|||| ||||||||||||| | |||| | |||||| ||| ||||||||| | ||||| ||||||||| |||||||||||| |
|
|
| T |
4581287 |
tttttgtgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgata |
4581208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 4493463 - 4493409
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatg |
257 |
Q |
| |
|
|||||||||||||||||| | ||||| |||| |||||||||||||||| ||||| |
|
|
| T |
4493463 |
aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaatgcaatg |
4493409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 4517608 - 4517534
Alignment:
| Q |
487 |
gtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgata |
561 |
Q |
| |
|
||||||||||||| | |||| | || |||||||| ||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
4517608 |
gtgaacttcttgctagacttaaagattcttccaatgatggtcatattcctcctgttagttgcttagtttctgata |
4517534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 4259032 - 4259109
Alignment:
| Q |
483 |
tttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
||| ||||||||||||| |||||||| ||||| ||| ||||| || | || |||||||||||||||||||||||| |
|
|
| T |
4259032 |
tttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgat |
4259109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 4472689 - 4472616
Alignment:
| Q |
178 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaat |
251 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||| | ||||| ||||| ||||| ||||||||| |
|
|
| T |
4472689 |
cagatatgagtaattttgcaatgacaaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat |
4472616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 560
Target Start/End: Original strand, 4489093 - 4489130
Alignment:
| Q |
523 |
ctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4489093 |
ctggtcttatccctccagttacttgcttagtttctgat |
4489130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 560
Target Start/End: Original strand, 4503189 - 4503226
Alignment:
| Q |
523 |
ctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4503189 |
ctggtcttatccctccagttacttgcttagtttctgat |
4503226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 556
Target Start/End: Complemental strand, 4623575 - 4623506
Alignment:
| Q |
487 |
gtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttc |
556 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||| |||||||| | || || ||||||||||||||||| |
|
|
| T |
4623575 |
gtgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttc |
4623506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 556
Target Start/End: Original strand, 4483654 - 4483690
Alignment:
| Q |
520 |
aatctggtcttatacctcctgttacttgcttagtttc |
556 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4483654 |
aatctggtcttgtgcctcctgttacttgcttagtttc |
4483690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 561
Target Start/End: Complemental strand, 4569347 - 4569267
Alignment:
| Q |
482 |
ttttcgtgaacttcttgccaaacttcac-gactcttccaaatctggtcttatacctcctgttacttgcttagtttctgata |
561 |
Q |
| |
|
|||| ||||||||||||| |||||| | || |||||||| || |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4569347 |
tttttgtgaacttcttgctaaacttaaaagattcttccaatgatgatcttattcctcctgttagttgcttagtttctgata |
4569267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 203 - 404
Target Start/End: Complemental strand, 1282991 - 1282790
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||||||||||| ||||| | |||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1282991 |
aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc |
1282892 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || |||| ||||||| || | |||||||||||||| ||| ||||||| ||| | ||||||| |
|
|
| T |
1282891 |
tttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatg |
1282792 |
T |
|
| Q |
403 |
gt |
404 |
Q |
| |
|
|| |
|
|
| T |
1282791 |
gt |
1282790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 3088325 - 3088161
Alignment:
| Q |
181 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
280 |
Q |
| |
|
|||||||| | |||| ||| ||||| |||||||| ||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
3088325 |
agatgagttactttgttgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttca |
3088226 |
T |
|
| Q |
281 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaa |
345 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||||| |||||||||||||| || |||||||| |||| |
|
|
| T |
3088225 |
ccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaa |
3088161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 560
Target Start/End: Complemental strand, 2407 - 2016
Alignment:
| Q |
178 |
cagagatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactact |
277 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||| ||||| | |||||||||| ||||||| |||||||||||| | || ||||||||||| || || |
|
|
| T |
2407 |
cagagatgagtagttttgcaaacaaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttct |
2308 |
T |
|
| Q |
278 |
tcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtcc-aataccctttgatggtttcactga |
376 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||| || |||| ||||| ||| | | ||||||||||| |||| |
|
|
| T |
2307 |
tcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctc-ttgatggtttcgctga |
2209 |
T |
|
| Q |
377 |
ctttcgctttgagaccgttccagatggttcaacttc------acatggtgatg---atgttagtcaagacttccaatctcttcgtgaattaattagaacg |
467 |
Q |
| |
|
||| |||| ||||| |||| ||||||| |||| | | ||| ||||| |||||||||||||| | | |||||| || ||| ||| |||| |
|
|
| T |
2208 |
tttttgcttcgagactattcccgatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaa |
2109 |
T |
|
| Q |
468 |
aacttcatcgacagttttcgtgaacttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
|||||| | || ||||| ||||||||||| | |||| |||| ||| |||| ||||||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
2108 |
aacttccttcacttctttcgcgaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgat |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 203 - 560
Target Start/End: Original strand, 2021 - 2387
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
||||||||||| ||| | | |||||||||| ||||||| |||||||||||| |||| ||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
2021 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
2120 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtcc-aataccctttgatggtttcactgactttcgctttgagaccgttccagat |
401 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| || |||| ||||| ||| | | ||||||||||| |||| ||| |||| ||||| |||| ||| |
|
|
| T |
2121 |
tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctc-ttgatggtttcgctgatttttgcttcgagactattcccgat |
2219 |
T |
|
| Q |
402 |
ggttcaacttc------acatggtgatg---atgttagtcaagacttccaatctcttcgtgaattaattagaacgaacttcatcgacagttttcgtgaac |
492 |
Q |
| |
|
|||| |||| | | ||| ||||| |||||||||||||| | | |||||| || ||| ||| |||| |||||| | || ||||| |||| |
|
|
| T |
2220 |
ggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttcacttctttcgcgaac |
2319 |
T |
|
| Q |
493 |
ttcttgccaaacttcacgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgat |
560 |
Q |
| |
|
||||||| | |||| |||| ||| |||| ||||||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
2320 |
ttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgat |
2387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 404
Target Start/End: Complemental strand, 1316 - 1115
Alignment:
| Q |
203 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
302 |
Q |
| |
|
|||| ||||||| ||||| | |||||||||| |||||| |||||||||||| |||| |||||||||||||| ||||||||||||||| | | |||| |
|
|
| T |
1316 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1217 |
T |
|
| Q |
303 |
tttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgactttcgctttgagaccgttccagatg |
402 |
Q |
| |
|
| |||||| |||||||||||||||||||| ||||| || |||| ||||||| |||| |||||||||||||| ||| ||||||| ||| | ||||||| |
|
|
| T |
1216 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatg |
1117 |
T |
|
| Q |
403 |
gt |
404 |
Q |
| |
|
|| |
|
|
| T |
1116 |
gt |
1115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 24104626 - 24104519
Alignment:
| Q |
230 |
tccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaa |
329 |
Q |
| |
|
|||| ||||||||||||||||| || |||| ||||||| ||| || |||||||||||||||||| ||||||| || || || || ||||||||||||||| |
|
|
| T |
24104626 |
tccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaa |
24104527 |
T |
|
| Q |
330 |
cgcttgct |
337 |
Q |
| |
|
|||||||| |
|
|
| T |
24104526 |
cgcttgct |
24104519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 1349545 - 1349618
Alignment:
| Q |
261 |
aaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgctt |
334 |
Q |
| |
|
||||| |||||| |||||||| | |||||| ||||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
1349545 |
aaactggcaaaaatacttcacaacaaaggcttctacataacatttgtcaacactgaattcaaccacaaacgctt |
1349618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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