View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7873_low_6 (Length: 318)
Name: NF7873_low_6
Description: NF7873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7873_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 5474798 - 5474507
Alignment:
| Q |
18 |
ggtaagacatgttttatgaataacaatgctactagcagtttcattctgcttgtttcaaggtagtttccaatatgaacggnnnnnnnnn--ttgtgtttct |
115 |
Q |
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| T |
5474798 |
ggtaagacatgttttatgaataacaatgctactagcagtttcattctgcttgtttcaaggtagttttcaatatgaacggaaaaacaaaaattgtgtttct |
5474699 |
T |
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| Q |
116 |
tacaatggaggatctaaacagttttgaaaataaagtgacataaactttcactgaacaccttgtatgagaaaatgttttttctttgaattgtatcctcttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
5474698 |
tacaatggaggatctaaacagttttgaaaataaagtgaca--aactttcactaaacaccttgtatgagagaatgttttttctttgaattgtatcctgttt |
5474601 |
T |
|
| Q |
216 |
tttatatgctttcccgtatcattatcaccgtgagaaattttccattacggtacttattctacttcaatttcatcctcgttcctccatttcattt |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5474600 |
tttatatgctttcccgtatccttatcaccgtgagaaattttccattacggtacttattctacttcaatttcatcctcgttcctccatttcattt |
5474507 |
T |
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