View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7873_low_7 (Length: 306)
Name: NF7873_low_7
Description: NF7873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7873_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 8577479 - 8577753
Alignment:
| Q |
25 |
atgttaatgttaatggtgaggttatgaaaggaatcatattatatggattgaagaaaaagatggtagctggaatgatctctccaaaactcttattgttctc |
124 |
Q |
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| T |
8577479 |
atgttaatgttaatggtgaggttatgaaaggaatcatattatatggattgaagaaaatgatggtagctggaatgatctctccaaaactcttattgttctc |
8577578 |
T |
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| Q |
125 |
aaatttgtgcttctcacttatttatactacaacttatctaggttaagctccattgttaat----tgaggaaaattctaaattttgtatagtaggtggaat |
220 |
Q |
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| T |
8577579 |
aaatgtgtgcttctcacttatttatactacaactcatctaggttaagctccattgttaattaaatgaggaaaattccaaattttgtatagtaggtggaat |
8577678 |
T |
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| Q |
221 |
-----gnnnnnnntaatggttgtacaatcctgcagagtttgttacaactaaagaggtgttgccatgtggttactg |
290 |
Q |
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| T |
8577679 |
gaaaagaaaaaaaaaatggttgtacaatcctgcagagtttgttacaactaaagaggtgtggccatgtggttactg |
8577753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 8597415 - 8597367
Alignment:
| Q |
242 |
atcctgcagagtttgttacaactaaagaggtgttgccatgtggttactg |
290 |
Q |
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| T |
8597415 |
atcctgcagagtttgttacaacgaaagaggtgtggccatgtggttactg |
8597367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 8597451 - 8597414
Alignment:
| Q |
112 |
tcttattgttctcaaatttgtgcttctcacttatttat |
149 |
Q |
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| T |
8597451 |
tcttaatgttctcaaatgtgtgcttctcacttatttat |
8597414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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