View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_high_1 (Length: 565)
Name: NF7874_high_1
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Complemental strand, 32552563 - 32552024
Alignment:
| Q |
13 |
aatatgatgatcaatagaaaacataaatactacattaacaaagatacaaattggcaataggataattgtaaaaagggaaatgacatgactaaatgattct |
112 |
Q |
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| T |
32552563 |
aatatgatgatcaatagaaaacataaatactacattaacaaatatacaaattggcaataggataattgtaaaaagggaaatgacatgactaaatgattct |
32552464 |
T |
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| Q |
113 |
atccagtccacaagttctaacttaattgataaaaatttcgaaattgttaaaccgaacatcatgatttaggtttaaattaaaccccaatctctccactt-- |
210 |
Q |
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| T |
32552463 |
atccagtccacaagttctaacttaattgataaaaaatttgaaattgttaaaccgaacatcatgatctaggtttaaa-----ccccgatctctccacttat |
32552369 |
T |
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| Q |
211 |
--gtgtgagtttcaataattatctgtcatttcgttatctaaaaaatatagaatattcataagtgcgtcttattttcaagtgtttaattaagctttcatac |
308 |
Q |
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| T |
32552368 |
atgtgtgagtttcaataattatctgtcatatcgttatctaaaaaatatagactattcataagtgcgtcttattttcaaatgtttaattaagctttcatac |
32552269 |
T |
|
| Q |
309 |
cgattaataatcaaacatatattaatcatatttacctcttggaccatctcgtcgagtaccatgcctagtgcctcataagaagtaatttcaccannnnnnn |
408 |
Q |
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| T |
32552268 |
cgattaattatcaaacatatattaatcatatttacctcttggaccatctcgtcgagtaccatgcctagtgcctcataagaagtaatttcaccattttttt |
32552169 |
T |
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| Q |
409 |
ctctcccaattaaagttagtaccatcataccatgcatagctagttcatcggagcgtgaccttagaaaattcttgaaatctcttccaaattgctcaacata |
508 |
Q |
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| T |
32552168 |
ctctcccaattaaagttagtaccatcacaccatgcatagctagttcatcggagcgtgaccttagaaaattcttgaaatctcttccaaattgctcaacata |
32552069 |
T |
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| Q |
509 |
tacctcatacactgatggagggctcattcttgttatgtagatatt |
553 |
Q |
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| T |
32552068 |
tacctcatacactgatggagggctcattcttgttatgcagatatt |
32552024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 553
Target Start/End: Original strand, 32649174 - 32649267
Alignment:
| Q |
460 |
agcgtgaccttagaaaattcttgaaatctcttccaaattgctcaacatatacctcatacactgatggagggctcattcttgttatgtagatatt |
553 |
Q |
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| T |
32649174 |
agcgtgacttgagaaaatacttgaaatctctttcaaattgcttaaaatatgcttcataaaccgatggaggactagttcttgatatgtaaatatt |
32649267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 32545626 - 32545559
Alignment:
| Q |
462 |
cgtgaccttagaaaattcttgaaatctcttccaaattgctcaacatatacctcatacactgatggagg |
529 |
Q |
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| T |
32545626 |
cgtgactttagaaaatacttgaaatctctttcaaattacttaaaatatgcttcatagactgatggagg |
32545559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 553
Target Start/End: Complemental strand, 27878351 - 27878131
Alignment:
| Q |
336 |
atatttacctcttggaccatctcgtcgagtaccatgcctagtgcctcataa---gaagtaatttcaccannnnnnnctctcccaattaaagttagtacca |
432 |
Q |
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||||||||||||||||||||||||| |||||||| ||| ||| |||| | | |||||||||||| |||| ||||| || |||||||||| |
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| T |
27878351 |
atatttacctcttggaccatctcgttgagtaccaggccaagtacctcttgaatagaagtaatttcatttgatgtttctctgccaatgaatgttagtacca |
27878252 |
T |
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| Q |
433 |
tcataccatgc-atagctagttcatcggagcgtgaccttagaaaattcttgaaatctcttccaaattgctcaacatatacctcatacactgatggagggc |
531 |
Q |
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| T |
27878251 |
tcataccatctgata-ctatttcttcgaagcgtgactttagaaaacacttgaaatctcttgcaaattgcacaaaatatgcttcatagaccgatggaggac |
27878153 |
T |
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| Q |
532 |
tcattcttgttatgtagatatt |
553 |
Q |
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| T |
27878152 |
ttgttcttgatatgtaaatatt |
27878131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 31078591 - 31078547
Alignment:
| Q |
118 |
gtccacaagttctaacttaattgataaaaatttcgaaattgttaa |
162 |
Q |
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| T |
31078591 |
gtccacaactcctaacttaactgataaaaatatcgaaattgttaa |
31078547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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