View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7874_high_12 (Length: 293)
Name: NF7874_high_12
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 32432732 - 32432993
Alignment:
| Q |
14 |
aaatgaatattgagaaagatgaaaaataggtaaggaatgtatagaataagtggttgtagaaatatatatttttctttaaccaccctccaaacttcttagg |
113 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32432732 |
aaatgaatattgagaaagacaaaaaatagttaaggaatgtatagaataagtggctgtagaaatatatatttttcttttcccaccctccaaacttcttagg |
32432831 |
T |
|
| Q |
114 |
caccctatttcggattttaaaatctgaaaaatggatggtttatggaggattcctgaacgttttaacacctttcgtattatataatccgaaatgttgtagg |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32432832 |
caccctatttcggattttaaaatccgaaaaatggatggtttatggaggattcctgaacgtttttacaccttttgtattatataatccgaaatgttgtagg |
32432931 |
T |
|
| Q |
214 |
acacgcgagaagcttggagtgtgggaaaagaaactcgcaaaaaataatgcctaacaaatttt |
275 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32432932 |
atacgcgagaagcttggagtgtgggaaaagaaactcgcaaaaaataatgcctaacaaatttt |
32432993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 25790228 - 25790364
Alignment:
| Q |
113 |
gcaccctatttcggattttaaaatctgaaaaatggatggtttatggaggattcctgaacgttttaacacctttcgtattatataatccgaaatgttgtag |
212 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||| |||||||||||| || ||||| |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
25790228 |
gcaccctattttagattttaatatccaaaaaatggagggtttatggagggtttttgaacatttttacacctttcagattatataatctaaaatgttgtag |
25790327 |
T |
|
| Q |
213 |
gacacgcgagaagcttggagtgtgggaaaagaaactc |
249 |
Q |
| |
|
||| |||||||||||| | |||||||||||||||| |
|
|
| T |
25790328 |
gacttgcgagaagcttgaaaggtgggaaaagaaactc |
25790364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University