View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_high_13 (Length: 274)
Name: NF7874_high_13
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 3152519 - 3152255
Alignment:
| Q |
1 |
ctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152519 |
ctccttcacaccaattttgatgactatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtc |
3152420 |
T |
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| Q |
101 |
acacgcaagtcatctgccaacatgtatgttgatggtcctctagcatgatgccaccaaca--cccatcctaaaccttgaaatgtagatgatgaatgaaaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |
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| T |
3152419 |
acacgcaagtcatctgccaacatgtatgttgatggtcctctagcatgatgccaccaacacccccatcctaaaccttgaaatgtagatgattaatgagaat |
3152320 |
T |
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| Q |
199 |
acttaagaccaaccgatttaagcttatatggtacaaacttatcaggaacaccattattattcttc |
263 |
Q |
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| T |
3152319 |
acttaagaccaaccgatttaagcttatatggtacaaacttatcaggaacaccattattattcttc |
3152255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24231287 - 24231425
Alignment:
| Q |
1 |
ctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtc |
100 |
Q |
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|||||| |||||||||||||| || |||||||||||||||| || || ||||| ||||| |||||| |||||||||||| ||||||||||||||| || |
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| T |
24231287 |
ctccttgacaccaattttgataactctttcctccaaatcagatagtgggacttttgatctttttagaagtgacatagtagaaatggacgacattggactc |
24231386 |
T |
|
| Q |
101 |
acacgcaagtcatctgccaacatgtatgttgatggtcct |
139 |
Q |
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| T |
24231387 |
acacacaagtcgtctgtcaccatatacattgatggtcct |
24231425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3493615 - 3493753
Alignment:
| Q |
1 |
ctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtc |
100 |
Q |
| |
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||||||||||||||||||||| || |||| ||||||||||| ||| ||||||| ||||| || ||| | |||| |||||||| ||||||||| || || |
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| T |
3493615 |
ctccttcacaccaattttgataactctttcttccaaatcagatagacgaacttttgatcttttgagaaacaacattgtagatattgacgacattagactc |
3493714 |
T |
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| Q |
101 |
acacgcaagtcatctgccaacatgtatgttgatggtcct |
139 |
Q |
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||| |||| ||| | || |||||| |||||||||||| |
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| T |
3493715 |
acaaacaagctatcagtcaccatgtacgttgatggtcct |
3493753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 24150043 - 24150107
Alignment:
| Q |
79 |
agatatggacgacattggagtcacacgcaagtcatctgccaacatgtatgttgatggtcctctag |
143 |
Q |
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|||||| |||||||||||||||||| |||||| || | || |||| ||||| |||||||||||| |
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| T |
24150043 |
agatattgacgacattggagtcacaaccaagtcgtcggtcaccatgaatgttaatggtcctctag |
24150107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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