View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7874_high_14 (Length: 268)
Name: NF7874_high_14
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 13587368 - 13587130
Alignment:
| Q |
18 |
gaaatgctggtttcattccattggaagatatttcattatacaatattattgatttctctgtgtgcccactgtttaacaagccaggaactagagcagtgta |
117 |
Q |
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| T |
13587368 |
gaaatgctggtatcatttcattggaagatatttcattatacaatattattgatttctccgtgtgcccactgtttaacaagccaggaactagagcagtgta |
13587269 |
T |
|
| Q |
118 |
tgttacattatccggttctagtcctcggtcaataatttcgttatacaataaccttttatcgaaattgtgttagttacaacgtcgggtgt-aaatccaatc |
216 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
13587268 |
tgttacattacctggttctagtcctcggtcaataatttcgttatac---aaccttttatcgtaattgtgttagttacaacgtcggctgtaaaatccaatc |
13587172 |
T |
|
| Q |
217 |
caaaagaaaaaatcaaacaaacaacgaacgttccatattccc |
258 |
Q |
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| || |||||||||||||||| | |||||||||||||||||| |
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| T |
13587171 |
ccaaggaaaaaatcaaacaaagagcgaacgttccatattccc |
13587130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 267274 - 267142
Alignment:
| Q |
25 |
tggtttcattccattggaagatatttcattatacaa-tattattgatttctctgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttac |
123 |
Q |
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| T |
267274 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
267175 |
T |
|
| Q |
124 |
attatccggttctagtcctcggtcaataatttc |
156 |
Q |
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| T |
267174 |
attatccggttgtagtcctccgtcaataatttc |
267142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 6783236 - 6783362
Alignment:
| Q |
30 |
tcattccattggaagatatttcattatacaatattattgatttctctgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttacattatc |
129 |
Q |
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| T |
6783236 |
tcattcccttggaagacatttcatcatagtatataattgctatctccttttgccttccgtttaacaagccccaaattagagcagtgtatgttactctatc |
6783335 |
T |
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| Q |
130 |
cggttctagtcctcggtcaataatttc |
156 |
Q |
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|||| ||||||| ||||||||||||| |
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| T |
6783336 |
tggttttagtccttggtcaataatttc |
6783362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 6783659 - 6783756
Alignment:
| Q |
163 |
caataaccttttatcgaaattgtgttagttacaacgtcgggtgtaaatccaatccaaaagaaaaaatcaaacaaacaacga--acgttccatattccc |
258 |
Q |
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| T |
6783659 |
caataaccttttatcataattgtataagttacaacgacgagcgtaaatcctctcccgatgaaaaaatcaaacaaagagcgagcacgttccatattccc |
6783756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 51283868 - 51283741
Alignment:
| Q |
25 |
tggtttcattccattggaagatatttcattatacaatattattgatttctctgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttaca |
124 |
Q |
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|||| ||||||| |||||||| ||||||||||||||| | | | | |||||| ||||||||||||||||||||| | || || |||||||||||||||| |
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| T |
51283868 |
tggtgtcattcccttggaagacatttcattatacaatgtaacttctatctctgggtgcccactgtttaacaagcccgaaaataaagcagtgtatgttaca |
51283769 |
T |
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| Q |
125 |
ttatccggttctagtcctcggtcaataa |
152 |
Q |
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||||| ||||||||||||| || ||||| |
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| T |
51283768 |
ttatctggttctagtcctctgttaataa |
51283741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 41628112 - 41627994
Alignment:
| Q |
25 |
tggtttcattccattggaagatatttcattatacaatattattgatttctctgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttaca |
124 |
Q |
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|||| ||||||| |||||||| ||||||||||||||| | | || | |||||| || |||||||||||||||||| | || || |||||||||||||||| |
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| T |
41628112 |
tggtgtcattcccttggaagacatttcattatacaatgtaactgctatctctgagttcccactgtttaacaagcccgaaaataaagcagtgtatgttaca |
41628013 |
T |
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| Q |
125 |
ttatccggttctagtcctc |
143 |
Q |
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||||| ||||||||||||| |
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| T |
41628012 |
ttatctggttctagtcctc |
41627994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 41627687 - 41627611
Alignment:
| Q |
161 |
tacaataaccttttatcgaaattgtgttagttacaacgtcgggtgtaaatccaatccaaaagaaaaaatcaaacaaa |
237 |
Q |
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||||||||| ||||||| ||||||| ||| |||||||| || |||||||| ||| || |||||||||||||||| |
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| T |
41627687 |
tacaataactttttatcatgattgtgtaagtcacaacgtctggcgtaaatcctctcccaaggaaaaaatcaaacaaa |
41627611 |
T |
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