View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7874_high_2 (Length: 439)
Name: NF7874_high_2
Description: NF7874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7874_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 99 - 420
Target Start/End: Complemental strand, 409833 - 409512
Alignment:
| Q |
99 |
aagataaatcatgaacatgtaccatacctgctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
198 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
409833 |
aagataaatcatgtaaatgtaccataccagctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
409734 |
T |
|
| Q |
199 |
agcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
409733 |
agcagcaatagtattagcagtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccagctctacca |
409634 |
T |
|
| Q |
299 |
acaactttcaactttccttttcctgcttcaaacacttgccttgtaactttcgtaccgcttctcacaatcaaagcatcacagcttgagatcttcttgcata |
398 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
409633 |
acaactttcaactttcctttccctgcttcaaacactttccttgtaactttcgtaccgcttctcacaatcaaagcatcacagcttgagatcttcttgcata |
409534 |
T |
|
| Q |
399 |
ggtcttctggtgaaagatcata |
420 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
409533 |
ggtcttctggtgaaagatcata |
409512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 48784796 - 48784678
Alignment:
| Q |
185 |
atcccatgttcagcagcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaa |
284 |
Q |
| |
|
||||| |||||||| || |||| ||| ||||| || |||||||| ||||| | |||||| ||||||||| || |||||||| |||||||| |||| |
|
|
| T |
48784796 |
atcccgtgttcagcggcggcaacagtgttagcagtgggagcattaacaaccaagcaaccatgttcagtagcggcggccagatccacgttatcaataccaa |
48784697 |
T |
|
| Q |
285 |
caccagctctaccaacaac |
303 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48784696 |
caccagctctaccaacaac |
48784678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University